Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq290 147 3e-30 >seq290 Length=478353 Score = 147 bits (162), Expect = 3e-30 Identities = 944/1491 (63%), Gaps = 56/1491 (4%) Strand=Plus/Minus Query 111530 AGACTACGACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACT 111589 ||| | ||| | || |||||||| ||||||| || || | | ||| || | ||| | Sbjct 254890 AGATTTCGAATATGATTATTTTGCCTTCAAGACTCTAGAAAGATCCTATCTTCTCAGAAT 254831 Query 111590 GGATGGTGTCTTGATGGAAACCCCACAGTACATGTTC--ATGCGGGTCGCGATCGGTATC 111647 ||| | |||||| |||||| ||| ||| ||||| || | ||||| Sbjct 254830 TGATAACAAAGTTGTGGAAAGACCACAG--CATCTTCTAATGCGAGTTTCTTGTGGTATA 254773 Query 111648 CATGGGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGG-TATGTT 111706 ||| | | |||||||| ||| | | ||||||||||| ||||| | ||| || Sbjct 254772 CATTGTGGTGATATTGAAGCTGCTCTTGAGACATACGAGTTAATGTCGCAAAAATATTTT 254713 Query 111707 CATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTG 111766 | || || ||||| || || ||||| | || |||||| |||| |||||||| ||| Sbjct 254712 -ACACATGCTACACCTACACTTTTCAATTCAGGAACACCACGACCACAAATGTCATCTTG 254654 Query 111767 TTTCCTTATTGCAAACAAG----GAGGATTCAATCAATGGCATTTACGGCACTCTCACTG 111822 ||| |||| | || || || ||||| || || |||| | ||| || ||| Sbjct 254653 ----CTTTTTGCTCAGAATTCCAGAAGACTCAATAAACGGTATTTTTGACACGCTAACTA 254598 Query 111823 AATGTGCCCAAATCTCA--AAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAG 111880 ||||||| |||| | | ||| || |||||| | ||| || | | || | || Sbjct 254597 AATGTGC--AAATATTAGCAAGACTGCAGGTGGTCTTGGGGTGGCAGTAAGTAATATTAG 254540 Query 111881 AGCCAACAAGT-CTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGC 111939 || ||| || | |||| |||| || ||||| | || |||| | |||||||||| Sbjct 254539 AGG-AACTGGTTCATATATTCGAGGAACCAATGGGAAGTCTAATGGACTAATTCCAATGC 254481 Query 111940 TTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAA---GCTGGGCGTCGCAAGGGAT 111996 | ||||| | ||| | || || | ||| | | ||| | |||| || || || Sbjct 254480 TGCGCGTTTATAATGATACTGCTAGGTATATTGATCAAGGCGGTGGGAAACGTAAAGGTG 254421 Query 111997 CTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTC 112056 |||| ||| | ||| | || |||||||| ||| | | ||||| |||| | | Sbjct 254420 CTATTGCAATTTATTTGGAACCATGGCATTTGGACGTTGTAGAGTTTATTGAAATTAGAA 254361 Query 112057 TCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAG 112116 ||||| || | || ||| | | || || || ||||| | || || ||| |||| | Sbjct 254360 AAAACCACGGAAAGGAAGAGATGAGATGTCGTGACCTCTTTCCTGCCCTTTGGGTTCCTG 254301 Query 112117 ATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAG- 112175 |||| || ||| |||| ||||| || | ||||| | | | || || ||| || Sbjct 254300 ATCTATTTATGGAGAGGGTTGAAAAGGATCAAGATTGGACCTTGATGTGCCCGGACGAGT 254241 Query 112176 GCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTT--GAAGCCCTCTACACAAAGTACG 112233 ||| || | |||| |||||| |||||| ||| | ||| | | |||| Sbjct 254240 GCA-GAGGATTGCAGGATGTTTGGGGTGATGAGTTTAGGAA--ATTGTACGAAGAATACG 254184 Query 112234 AGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCA 112293 | || || | || | || ||| || ||| | | ||| || | Sbjct 254183 AAAAACAAGGGCGTGGGAGAAAGACCATGAAAGCGCAAAAACTTTGGTTTTTAATATTGC 254124 Query 112294 AGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCA-AAAG 112352 || |||||| || || || || |||| ||| ||| || || | ||| || | || Sbjct 254123 AGGCTCAAATTGAAACGGGAACGCCATTTATTTGTTATAAGGATG-CTGCAAATAGGAAA 254065 Query 112353 AGTAATCAAAAGAATTTGGG---TGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTG 112409 ||||| |||||||||||||| | | || ||| ||| | || |||||||| || Sbjct 254064 AGTAACCAAAAGAATTTGGGAACTATTGTCTCAAGT---AACTTATGCACAGAAATAATG 254008 Query 112410 GAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAG 112469 |||| || |||||| | || || ||||| || ||||| |||| | || ||| Sbjct 254007 GAATACACTAGTGGAGATGAAATTGCAGTTTGTAATCTGGCATCTATCGGGTTACCGAAG 253948 Query 112470 TATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACT 112529 | || ||| ||| | || |||||| ||| ||| || | | ||||||||||| Sbjct 253947 TTCGTTGATAAAGATAACAAAACATTTAATTTTGACAAGTTAAAGGAAGTTACGAAGGTG 253888 Query 112530 GTCACAAAAAACCTAAACAGAGTTATTGA---TAGAAATTTTTACCCCGTTGAGACTGCT 112586 | || | || |||| | ||| |||| | | | | || ||| ||| || | Sbjct 253887 ATTACGAGGAATTTAAATAAAGTAGTTGACTTTGGGTACTATT--CCCTCCCAGAATG-T 253831 Query 112587 CGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGA-TG- 112644 || || ||| | ||||| ||||| | || |||| |||||||| |||||||| || Sbjct 253830 AAAAATTCAAATCTAAGACATCGTCCGTTGGGAATCGGCGTCCAAGGGCTCGCGGACTGC 253771 Query 112645 -TATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGT 112703 | | || ||| || | | | ||| || || |||| || | | ||| Sbjct 253770 TTTATGATGCTTCGTATGC---CGTATGACTCAGATAAAGCTAAAAAGCTGAATAAAGAA 253714 Query 112704 ATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGAT 112763 || ||||| |||||| |||| ||||||||||| || | ||| | ||||| ||| Sbjct 253713 ATTTTTGAAGTTATGTATTACGCAGCTCTTGAGGCTAGCTGTGAGCTTGCAGAAAAAGAT 253654 Query 112764 GGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATG 112823 || ||||| || | | | || || || || |||| | | |||||||||||| Sbjct 253653 GGGCCATACGAGTCATATTCTGGATCACCTGCGAGTAAAGGTATCTTGCAATTTGATATG 253594 Query 112824 TGGGAAGGTGAGACCAAGCTT-----CACTACGACTGGGACGCTCTCAAGGAACGCATCA 112878 |||| | || | ||| || || | | |||||||| | || || ||| | ||| Sbjct 253593 TGGGGA-GTTACACC-AGATTCTGGGCTTTGTGACTGGGATTCACTTAAAGAAAGAATCT 253536 Query 112879 AGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCAC 112938 || | || ||||||| ||| || || | |||||||| || ||||| || ||| Sbjct 253535 CTAAGTATGGGATTCGTAATTCTCTCTTAATATCTCCAATGCCTACTGCCTCTACTTCAC 253476 Query 112939 AAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATC 112989 | || || ||||| ||||| | ||||| |||| || | || || |||| Sbjct 253475 AGATTTTAGGTAACAATGAGAGTTTTGAGCCCTTTACTTCAAATATTTATC 253425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620735781334160