Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq290 147 3e-30
>seq290
Length=478353
Score = 147 bits (162), Expect = 3e-30
Identities = 944/1491 (63%), Gaps = 56/1491 (4%)
Strand=Plus/Minus
Query 111530 AGACTACGACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACT 111589
||| | ||| | || |||||||| ||||||| || || | | ||| || | ||| |
Sbjct 254890 AGATTTCGAATATGATTATTTTGCCTTCAAGACTCTAGAAAGATCCTATCTTCTCAGAAT 254831
Query 111590 GGATGGTGTCTTGATGGAAACCCCACAGTACATGTTC--ATGCGGGTCGCGATCGGTATC 111647
||| | |||||| |||||| ||| ||| ||||| || | |||||
Sbjct 254830 TGATAACAAAGTTGTGGAAAGACCACAG--CATCTTCTAATGCGAGTTTCTTGTGGTATA 254773
Query 111648 CATGGGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGG-TATGTT 111706
||| | | |||||||| ||| | | ||||||||||| ||||| | ||| ||
Sbjct 254772 CATTGTGGTGATATTGAAGCTGCTCTTGAGACATACGAGTTAATGTCGCAAAAATATTTT 254713
Query 111707 CATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTG 111766
| || || ||||| || || ||||| | || |||||| |||| |||||||| |||
Sbjct 254712 -ACACATGCTACACCTACACTTTTCAATTCAGGAACACCACGACCACAAATGTCATCTTG 254654
Query 111767 TTTCCTTATTGCAAACAAG----GAGGATTCAATCAATGGCATTTACGGCACTCTCACTG 111822
||| |||| | || || || ||||| || || |||| | ||| || |||
Sbjct 254653 ----CTTTTTGCTCAGAATTCCAGAAGACTCAATAAACGGTATTTTTGACACGCTAACTA 254598
Query 111823 AATGTGCCCAAATCTCA--AAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAG 111880
||||||| |||| | | ||| || |||||| | ||| || | | || | ||
Sbjct 254597 AATGTGC--AAATATTAGCAAGACTGCAGGTGGTCTTGGGGTGGCAGTAAGTAATATTAG 254540
Query 111881 AGCCAACAAGT-CTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGC 111939
|| ||| || | |||| |||| || ||||| | || |||| | ||||||||||
Sbjct 254539 AGG-AACTGGTTCATATATTCGAGGAACCAATGGGAAGTCTAATGGACTAATTCCAATGC 254481
Query 111940 TTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAA---GCTGGGCGTCGCAAGGGAT 111996
| ||||| | ||| | || || | ||| | | ||| | |||| || || ||
Sbjct 254480 TGCGCGTTTATAATGATACTGCTAGGTATATTGATCAAGGCGGTGGGAAACGTAAAGGTG 254421
Query 111997 CTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTC 112056
|||| ||| | ||| | || |||||||| ||| | | ||||| |||| | |
Sbjct 254420 CTATTGCAATTTATTTGGAACCATGGCATTTGGACGTTGTAGAGTTTATTGAAATTAGAA 254361
Query 112057 TCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAG 112116
||||| || | || ||| | | || || || ||||| | || || ||| |||| |
Sbjct 254360 AAAACCACGGAAAGGAAGAGATGAGATGTCGTGACCTCTTTCCTGCCCTTTGGGTTCCTG 254301
Query 112117 ATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAG- 112175
|||| || ||| |||| ||||| || | ||||| | | | || || ||| ||
Sbjct 254300 ATCTATTTATGGAGAGGGTTGAAAAGGATCAAGATTGGACCTTGATGTGCCCGGACGAGT 254241
Query 112176 GCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTT--GAAGCCCTCTACACAAAGTACG 112233
||| || | |||| |||||| |||||| ||| | ||| | | ||||
Sbjct 254240 GCA-GAGGATTGCAGGATGTTTGGGGTGATGAGTTTAGGAA--ATTGTACGAAGAATACG 254184
Query 112234 AGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCA 112293
| || || | || | || ||| || ||| | | ||| || |
Sbjct 254183 AAAAACAAGGGCGTGGGAGAAAGACCATGAAAGCGCAAAAACTTTGGTTTTTAATATTGC 254124
Query 112294 AGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCA-AAAG 112352
|| |||||| || || || || |||| ||| ||| || || | ||| || | ||
Sbjct 254123 AGGCTCAAATTGAAACGGGAACGCCATTTATTTGTTATAAGGATG-CTGCAAATAGGAAA 254065
Query 112353 AGTAATCAAAAGAATTTGGG---TGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTG 112409
||||| |||||||||||||| | | || ||| ||| | || |||||||| ||
Sbjct 254064 AGTAACCAAAAGAATTTGGGAACTATTGTCTCAAGT---AACTTATGCACAGAAATAATG 254008
Query 112410 GAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAG 112469
|||| || |||||| | || || ||||| || ||||| |||| | || |||
Sbjct 254007 GAATACACTAGTGGAGATGAAATTGCAGTTTGTAATCTGGCATCTATCGGGTTACCGAAG 253948
Query 112470 TATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACT 112529
| || ||| ||| | || |||||| ||| ||| || | | |||||||||||
Sbjct 253947 TTCGTTGATAAAGATAACAAAACATTTAATTTTGACAAGTTAAAGGAAGTTACGAAGGTG 253888
Query 112530 GTCACAAAAAACCTAAACAGAGTTATTGA---TAGAAATTTTTACCCCGTTGAGACTGCT 112586
| || | || |||| | ||| |||| | | | | || ||| ||| || |
Sbjct 253887 ATTACGAGGAATTTAAATAAAGTAGTTGACTTTGGGTACTATT--CCCTCCCAGAATG-T 253831
Query 112587 CGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGA-TG- 112644
|| || ||| | ||||| ||||| | || |||| |||||||| |||||||| ||
Sbjct 253830 AAAAATTCAAATCTAAGACATCGTCCGTTGGGAATCGGCGTCCAAGGGCTCGCGGACTGC 253771
Query 112645 -TATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGT 112703
| | || ||| || | | | ||| || || |||| || | | |||
Sbjct 253770 TTTATGATGCTTCGTATGC---CGTATGACTCAGATAAAGCTAAAAAGCTGAATAAAGAA 253714
Query 112704 ATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGAT 112763
|| ||||| |||||| |||| ||||||||||| || | ||| | ||||| |||
Sbjct 253713 ATTTTTGAAGTTATGTATTACGCAGCTCTTGAGGCTAGCTGTGAGCTTGCAGAAAAAGAT 253654
Query 112764 GGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATG 112823
|| ||||| || | | | || || || || |||| | | ||||||||||||
Sbjct 253653 GGGCCATACGAGTCATATTCTGGATCACCTGCGAGTAAAGGTATCTTGCAATTTGATATG 253594
Query 112824 TGGGAAGGTGAGACCAAGCTT-----CACTACGACTGGGACGCTCTCAAGGAACGCATCA 112878
|||| | || | ||| || || | | |||||||| | || || ||| | |||
Sbjct 253593 TGGGGA-GTTACACC-AGATTCTGGGCTTTGTGACTGGGATTCACTTAAAGAAAGAATCT 253536
Query 112879 AGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCAC 112938
|| | || ||||||| ||| || || | |||||||| || ||||| || |||
Sbjct 253535 CTAAGTATGGGATTCGTAATTCTCTCTTAATATCTCCAATGCCTACTGCCTCTACTTCAC 253476
Query 112939 AAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATC 112989
| || || ||||| ||||| | ||||| |||| || | || || ||||
Sbjct 253475 AGATTTTAGGTAACAATGAGAGTTTTGAGCCCTTTACTTCAAATATTTATC 253425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620735781334160
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