Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq223 87.8 2e-12
>seq223
Length=111419
Score = 87.8 bits (96), Expect = 2e-12
Identities = 296/457 (65%), Gaps = 12/457 (3%)
Strand=Plus/Plus
Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267
|| || || || ||||||||||||||||| || ||||| | |||||| || |||||
Sbjct 58860 TATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGTCCATC 58919
Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTGACCAACTTGTTTCAGAAGACGA 119327
| ||||||||||| || || | ||| || | | | || || | |
Sbjct 58920 CAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATCTAAAGCAAAAAGTAGTCTA 58979
Query 119328 TCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACAC 119387
|| | ||| | || ||||||| | ||| | ||||||||||| || |||| |
Sbjct 58980 TCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGATCAACA 59039
Query 119388 GGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGTGA 119447
|| |||| ||| | |||||| | || | || ||||||||| | ||| ||
Sbjct 59040 GGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGATTTGTTGT 59099
Query 119448 ATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACA--ACTCTACGGCAAATTCTT 119505
| | || | | |||| | | | | |||| | | | | | ||||| ||
Sbjct 59100 ACTCTAGAAGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAA--GCAAAATCAG 59157
Query 119506 GATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTC 119565
||| || |||||||| || ||| || || || ||| ||||||||||| ||||
Sbjct 59158 CATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGGCATAAGTC 59217
Query 119566 CTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCA--- 119622
| | ||| || |||||||| || |||||||| || |||||||| ||||| || || |
Sbjct 59218 CACGTTTTTTAAGCCAAAAAATAGCACAAAAGCTACCAGAAAATAAGATTCCTTCAACTG 59277
Query 119623 CACAGGCGAAAGCGAAT-AGACGCTCAGCAAAAGGTC 119658
||||| || | ||| | | ||||||||||| ||
Sbjct 59278 CACAG----AATCCAATAATTCTCTCAGCAAAAGATC 59310
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588969720043400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |