Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq223 87.8 2e-12 >seq223 Length=111419 Score = 87.8 bits (96), Expect = 2e-12 Identities = 296/457 (65%), Gaps = 12/457 (3%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || || || ||||||||||||||||| || ||||| | |||||| || ||||| Sbjct 58860 TATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGTCCATC 58919 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTGACCAACTTGTTTCAGAAGACGA 119327 | ||||||||||| || || | ||| || | | | || || | | Sbjct 58920 CAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATCTAAAGCAAAAAGTAGTCTA 58979 Query 119328 TCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACAC 119387 || | ||| | || ||||||| | ||| | ||||||||||| || |||| | Sbjct 58980 TCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGATCAACA 59039 Query 119388 GGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGTGA 119447 || |||| ||| | |||||| | || | || ||||||||| | ||| || Sbjct 59040 GGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGATTTGTTGT 59099 Query 119448 ATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACA--ACTCTACGGCAAATTCTT 119505 | | || | | |||| | | | | |||| | | | | | ||||| || Sbjct 59100 ACTCTAGAAGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAA--GCAAAATCAG 59157 Query 119506 GATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTC 119565 ||| || |||||||| || ||| || || || ||| ||||||||||| |||| Sbjct 59158 CATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGGCATAAGTC 59217 Query 119566 CTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCA--- 119622 | | ||| || |||||||| || |||||||| || |||||||| ||||| || || | Sbjct 59218 CACGTTTTTTAAGCCAAAAAATAGCACAAAAGCTACCAGAAAATAAGATTCCTTCAACTG 59277 Query 119623 CACAGGCGAAAGCGAAT-AGACGCTCAGCAAAAGGTC 119658 ||||| || | ||| | | ||||||||||| || Sbjct 59278 CACAG----AATCCAATAATTCTCTCAGCAAAAGATC 59310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588969720043400