Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq290 134 2e-26
>seq290
Length=478353
Score = 134 bits (148), Expect = 2e-26
Identities = 858/1355 (63%), Gaps = 38/1355 (3%)
Strand=Plus/Plus
Query 105933 GATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 105992
|||| || || | || |||| ||||| | ||||| ||||| || || |||| || |
Sbjct 253425 GATAAATATTTGAAGTAAAGGGCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAG 253484
Query 105993 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTT 106052
|||| || |||||||| | || || ||| ||||||| || | | ||| | ||
Sbjct 253485 AGGCAGTAGGCATTGGAGATATTAAGAGAGAATTACGAATCCCATACTTAGAGATTCTTT 253544
Query 106053 CCTTGAGAACATCCCAGTCGTAGTT----GAGCTTGGTTTCACCTTCCCACATATCAAAT 106108
| || || ||||||||| | || |||| | || | ||||||||||||||
Sbjct 253545 CTTTAAGTGAATCCCAGTCACAAAGCCCAGAATCTGGTGTAAC-TCCCCACATATCAAAT 253603
Query 106109 TGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCA 106168
|| | | |||| || || || || | ||| ||| || | || | |||
Sbjct 253604 TGCAAGATACCTTTACTCGCAGGTGATCCAGAATATGACTCGTATGGCCCATCTTTTTCT 253663
Query 106169 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 106228
|| | |||||||| ||||| || | ||||| |||||| |||||| || ||||
Sbjct 253664 GCAAGCTCACAGCTAGCCTCAAGAGCTGCGTAATACATAACTTCAAAAATTTCTTTATTC 253723
Query 106229 ATCTCCTTGGCTTCATCTGAATCAAATG-CGTAGCGGCACAAAATAAATACATCCGCGAG 106287
| || || |||| |||||| ||| | | | || || || ||||| ||||||||
Sbjct 253724 AGCTTTTTAGCTTTATCTGAGTCATACGGCATA-CGAAGCATCATAAAGCAGTCCGCGAG 253782
Query 106288 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAAC 106347
||||| || || | || | || | |||| | ||| || ||| || |||
Sbjct 253783 CCCTTGGACGCCGATTCCCAACGGACGATGTCTTAGATTTGAATTTTTA-CATTCTGGGA 253841
Query 106348 GGGA-TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 106406
|||| || | ||||| ||| |||| ||| | |||| | ||| || | ||
Sbjct 253842 GGGAATAGTACCCAAAGTCAACTACTTTATTTAAATTCCTCGTAATCACCTTCGTAACTT 253901
Query 106407 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 106466
| | | || ||| ||| ||| || | |||| || || |||| || | |||
Sbjct 253902 CCTTTAACTTGTCAAAATTAAATGTTTTGTTATCTTTATCAACGAACTTCGGTAACCCGA 253961
Query 106467 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 106526
| ||||||| ||| ||||| || | ||||| | ||||| || | |||||||| |
Sbjct 253962 TAGATGCCAGATTACAAACTGCAATTTCATCTCCACTAGTGTATTCCATTATTTCTGTGC 254021
Query 106527 ACAAGTTGGAACTCTT---AATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTT-GCAC 106582
| ||||| ||| ||| || |||||||||||||||||||| || | || |||
Sbjct 254022 ATAAGTT---ACTTGAGACAATAGTTCCCAAATTCTTTTGGTTACTTTTCCTATTTGCA- 254077
Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642
|||||||| || || | ||||| ||||| || | || | || | ||| |
Sbjct 254078 GCATCCTTATAACAAATAAATGGCGTTCCCGTTTCAATTTGAGCCTGCAATATTAAAAAC 254137
Query 106643 CACACATCGGCGGCTGGTACAATGGCGTTGGCCC--GTCCCTCCGCCTCGTACTTTGTGT 106700
|| | | ||| | || | | || ||| | || | ||||| | | ||
Sbjct 254138 CAAAGTTTTTGCGCT--TTCATGGTCTTTCTCCCACGCCCTTGTTTTTCGTATTCTTCGT 254195
Query 106701 AGAGGGCTTC--AAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC-CTTGTCTGGAC 106757
| | ||| |||||| |||||| | || | ||| ||| || ||| || |
Sbjct 254196 ACAAT--TTCCTAAACTCATCACCCCAAACATCCTGCAATCCTC-TGCACTCGTCCGGGC 254252
Query 106758 AGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 106817
| | | | ||| | | ||| ||||||| || ||| || || || |||| ||| |
Sbjct 254253 ACATCAAGGTCCAATCTTGATCCTTTTCAACCCTCTCCATAAATAGATCAGGAACCCAAA 254312
Query 106818 GGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAA 106877
||| | |||||| || | ||| | |||||| | || ||||| || | ||||
Sbjct 254313 GGGCAGGAAAGAGGTCACGACATCTCATCTCTTCCTTTCCGTGGTTTTTTCTAATTTCAA 254372
Query 106878 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC 106937
||||| | | ||| |||||||| || | ||| | ||| |||| || || ||
Sbjct 254373 TAAACTCTACAACGTCCAAATGCCATGGTTCCAAATAAATTGCAATAGCACCTTTACGTT 254432
Query 106938 GCCCAGC---TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 106994
|||| | ||||| | ||| | || || | ||| | ||||| ||||||||||| |
Sbjct 254433 TCCCACCGCCTTGATCAATATACCTAGCAGTATCATTATAAACGCGCAGCATTGGAATTA 254492
Query 106995 TACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGA 107054
|||| || | ||||| || || |||||| || | | |||| | || | |
Sbjct 254493 GTCCATTAGACTTCCCATTGGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTTA 254552
Query 107055 TGTGCATCCCAATACCCCCAGCCCACTT--TGAGATTTGCGCACACTCCGTAAGAGTTCC 107112
|| ||||| ||| || || ||| | | |||||| ||| | || || || |
Sbjct 254553 CTGCCACCCCAAGACCACCTGCAGTCTTGCTAATATTTGC--ACATTTAGTTAGCGTGTC 254610
Query 107113 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 107172
| | |||||||| |||||||| || | || | |||||| ||||| || ||
Sbjct 254611 AAAAATACCGTTTATTGAGTCTTCTGGAATTCTGAGCAAAAAGCAAGATGACATTTGTGG 254670
Query 107173 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG-GACA 107231
|| |||||| || | |||||| || || ||||| || || | || ||| || | ||||
Sbjct 254671 TCGTGGTGTTCCTGAATTGAAAAGTGTAGGTGTAGCATGTGTAAA-ATATTTTTGCGACA 254729
Query 107232 TCTTGTCGTATGTCTCCAAGA-CAGAATCAATGTC 107265
| |||||||||| ||||| ||| ||||| ||
Sbjct 254730 TTAACTCGTATGTCT-CAAGAGCAGCTTCAATATC 254763
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589974509329720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |