Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq290 134 2e-26 >seq290 Length=478353 Score = 134 bits (148), Expect = 2e-26 Identities = 858/1355 (63%), Gaps = 38/1355 (3%) Strand=Plus/Plus Query 105933 GATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 105992 |||| || || | || |||| ||||| | ||||| ||||| || || |||| || | Sbjct 253425 GATAAATATTTGAAGTAAAGGGCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAG 253484 Query 105993 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTT 106052 |||| || |||||||| | || || ||| ||||||| || | | ||| | || Sbjct 253485 AGGCAGTAGGCATTGGAGATATTAAGAGAGAATTACGAATCCCATACTTAGAGATTCTTT 253544 Query 106053 CCTTGAGAACATCCCAGTCGTAGTT----GAGCTTGGTTTCACCTTCCCACATATCAAAT 106108 | || || ||||||||| | || |||| | || | |||||||||||||| Sbjct 253545 CTTTAAGTGAATCCCAGTCACAAAGCCCAGAATCTGGTGTAAC-TCCCCACATATCAAAT 253603 Query 106109 TGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCA 106168 || | | |||| || || || || | ||| ||| || | || | ||| Sbjct 253604 TGCAAGATACCTTTACTCGCAGGTGATCCAGAATATGACTCGTATGGCCCATCTTTTTCT 253663 Query 106169 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 106228 || | |||||||| ||||| || | ||||| |||||| |||||| || |||| Sbjct 253664 GCAAGCTCACAGCTAGCCTCAAGAGCTGCGTAATACATAACTTCAAAAATTTCTTTATTC 253723 Query 106229 ATCTCCTTGGCTTCATCTGAATCAAATG-CGTAGCGGCACAAAATAAATACATCCGCGAG 106287 | || || |||| |||||| ||| | | | || || || ||||| |||||||| Sbjct 253724 AGCTTTTTAGCTTTATCTGAGTCATACGGCATA-CGAAGCATCATAAAGCAGTCCGCGAG 253782 Query 106288 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAAC 106347 ||||| || || | || | || | |||| | ||| || ||| || ||| Sbjct 253783 CCCTTGGACGCCGATTCCCAACGGACGATGTCTTAGATTTGAATTTTTA-CATTCTGGGA 253841 Query 106348 GGGA-TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 106406 |||| || | ||||| ||| |||| ||| | |||| | ||| || | || Sbjct 253842 GGGAATAGTACCCAAAGTCAACTACTTTATTTAAATTCCTCGTAATCACCTTCGTAACTT 253901 Query 106407 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 106466 | | | || ||| ||| ||| || | |||| || || |||| || | ||| Sbjct 253902 CCTTTAACTTGTCAAAATTAAATGTTTTGTTATCTTTATCAACGAACTTCGGTAACCCGA 253961 Query 106467 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 106526 | ||||||| ||| ||||| || | ||||| | ||||| || | |||||||| | Sbjct 253962 TAGATGCCAGATTACAAACTGCAATTTCATCTCCACTAGTGTATTCCATTATTTCTGTGC 254021 Query 106527 ACAAGTTGGAACTCTT---AATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTT-GCAC 106582 | ||||| ||| ||| || |||||||||||||||||||| || | || ||| Sbjct 254022 ATAAGTT---ACTTGAGACAATAGTTCCCAAATTCTTTTGGTTACTTTTCCTATTTGCA- 254077 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 |||||||| || || | ||||| ||||| || | || | || | ||| | Sbjct 254078 GCATCCTTATAACAAATAAATGGCGTTCCCGTTTCAATTTGAGCCTGCAATATTAAAAAC 254137 Query 106643 CACACATCGGCGGCTGGTACAATGGCGTTGGCCC--GTCCCTCCGCCTCGTACTTTGTGT 106700 || | | ||| | || | | || ||| | || | ||||| | | || Sbjct 254138 CAAAGTTTTTGCGCT--TTCATGGTCTTTCTCCCACGCCCTTGTTTTTCGTATTCTTCGT 254195 Query 106701 AGAGGGCTTC--AAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC-CTTGTCTGGAC 106757 | | ||| |||||| |||||| | || | ||| ||| || ||| || | Sbjct 254196 ACAAT--TTCCTAAACTCATCACCCCAAACATCCTGCAATCCTC-TGCACTCGTCCGGGC 254252 Query 106758 AGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 106817 | | | | ||| | | ||| ||||||| || ||| || || || |||| ||| | Sbjct 254253 ACATCAAGGTCCAATCTTGATCCTTTTCAACCCTCTCCATAAATAGATCAGGAACCCAAA 254312 Query 106818 GGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAA 106877 ||| | |||||| || | ||| | |||||| | || ||||| || | |||| Sbjct 254313 GGGCAGGAAAGAGGTCACGACATCTCATCTCTTCCTTTCCGTGGTTTTTTCTAATTTCAA 254372 Query 106878 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC 106937 ||||| | | ||| |||||||| || | ||| | ||| |||| || || || Sbjct 254373 TAAACTCTACAACGTCCAAATGCCATGGTTCCAAATAAATTGCAATAGCACCTTTACGTT 254432 Query 106938 GCCCAGC---TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 106994 |||| | ||||| | ||| | || || | ||| | ||||| ||||||||||| | Sbjct 254433 TCCCACCGCCTTGATCAATATACCTAGCAGTATCATTATAAACGCGCAGCATTGGAATTA 254492 Query 106995 TACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGA 107054 |||| || | ||||| || || |||||| || | | |||| | || | | Sbjct 254493 GTCCATTAGACTTCCCATTGGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTTA 254552 Query 107055 TGTGCATCCCAATACCCCCAGCCCACTT--TGAGATTTGCGCACACTCCGTAAGAGTTCC 107112 || ||||| ||| || || ||| | | |||||| ||| | || || || | Sbjct 254553 CTGCCACCCCAAGACCACCTGCAGTCTTGCTAATATTTGC--ACATTTAGTTAGCGTGTC 254610 Query 107113 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 107172 | | |||||||| |||||||| || | || | |||||| ||||| || || Sbjct 254611 AAAAATACCGTTTATTGAGTCTTCTGGAATTCTGAGCAAAAAGCAAGATGACATTTGTGG 254670 Query 107173 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG-GACA 107231 || |||||| || | |||||| || || ||||| || || | || ||| || | |||| Sbjct 254671 TCGTGGTGTTCCTGAATTGAAAAGTGTAGGTGTAGCATGTGTAAA-ATATTTTTGCGACA 254729 Query 107232 TCTTGTCGTATGTCTCCAAGA-CAGAATCAATGTC 107265 | |||||||||| ||||| ||| ||||| || Sbjct 254730 TTAACTCGTATGTCT-CAAGAGCAGCTTCAATATC 254763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589974509329720