Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq849 185 2e-41
seq445 167 5e-36
>seq849
Length=33325
Score = 185 bits (204), Expect = 2e-41
Identities = 174/222 (78%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|||||| ||||| || | ||| | |||||| || ||||| ||||||||||| | |||||
Sbjct 19402 TCTGAGCCTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCAGATAGAGT 19461
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| ||||| || || ||||| ||||||||||| | ||||||||||| || ||||| ||
Sbjct 19462 TCTTCCATCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGTGGAATTCC 19521
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||| ||||||||||| ||| || || |||||||| || || ||| || ||||| |
Sbjct 19522 TTCCTTGTCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCAA 19581
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | |||||||||||||||||||| || || | |||||
Sbjct 19582 TGTGATAGTCTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623
Score = 158 bits (174), Expect = 3e-33
Identities = 168/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| |||||||| || | || | |||||| |||||||| ||||||||||| | |||||
Sbjct 19174 TCTAAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAGAGAGAGT 19233
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| || || || | || || ||||| ||||| | ||||||||||| || ||||| ||
Sbjct 19234 TCTTCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTGGAATTCC 19293
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||| ||||||||||| ||| || || ||||| || || || ||| || ||||| |
Sbjct 19294 TTCCTTGTCTTGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCTACTTCCAA 19353
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | |||||||| ||||||||||| || || | |||||
Sbjct 19354 TGTTATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395
Score = 149 bits (164), Expect = 1e-30
Identities = 166/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|||||||||||| || | || | |||||| || ||||| ||||||||||| | |||||
Sbjct 19630 TCTGAGTCTCAATACCAAATGTAAAGTGGATTCCTTTTGGATATTGTAATCAGAGAGAGT 19689
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| || || || | || || || || ||||| | |||||||| || || ||||| ||
Sbjct 19690 TCTTCCGTCCTCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCC 19749
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||| || |||||||| ||| || || |||||||| || || ||| || ||||| |
Sbjct 19750 TTCCTTATCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCAA 19809
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | ||||||||||||||||| || || || | |||||
Sbjct 19810 TGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 19851
>seq445
Length=134117
Score = 167 bits (184), Expect = 5e-36
Identities = 170/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| ||||||| || | || | || ||||| || ||||||||||| || | | |||
Sbjct 79441 TCTAAGTCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGATAAAGT 79382
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| |||||||| | ||||| ||||| ||||| || || ||||| || || ||||||||
Sbjct 79381 TCTGCCATCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGGAATGCC 79322
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
|||||||| || || ||| ||| || |||||||||||||| ||| || ||||| |
Sbjct 79321 CTCTTTGTCCTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGCTCAACTTCCAA 79262
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | ||||||||||| ||||||||||| || | ||||||
Sbjct 79261 TGTGATGGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCAT 79220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109469474406251
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |