Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq223 268 1e-66
seq290 232 8e-56
>seq223
Length=111419
Score = 268 bits (296), Expect = 1e-66
Identities = 592/874 (68%), Gaps = 29/874 (3%)
Strand=Plus/Plus
Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716
||||||||| |||| ||||| ||||||| ||||| |||||||| ||||| || |
Sbjct 58841 CATTACTCCAGCCATTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTG 58900
Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776
| ||| ||| ||||| ||||||| ||||| | |||||||||||||| || |
Sbjct 58901 GAGTGAAATAAGGTCCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATC 58960
Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCAC---A 18833
||| | || ||||||||||| |||||||||| ||||||| || | |||| | |
Sbjct 58961 TAAAGCAAAAAGTAGTCTATCAGCTACAAATTCAATATAT-TGAGC--CATAAGTCTGGA 59017
Query 18834 ATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTAC 18893
|||||| || || | | |||||| || | ||| ||| || | | ||| | || ||
Sbjct 59018 ATTCATACCAATAAGATCAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAAC 59077
Query 18894 TGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAG--AAGATGTTTA 18951
|| ||||| || || | |||||| || | || || | ||| ||||
Sbjct 59078 AGCTTCTGAGATGATTTGTTGTACTCTAGAAG--TTGGTAGTTTAAATTTAAGGGCTTTA 59135
Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011
| || || || ||||||||| ||||||||| || || | || || | ||| || |||
Sbjct 59136 TAGATTAAGCAAGCAAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAA 59195
Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CC 19070
|| || | |||||||| ||||| | |||||| | ||| || |||| | |||| | | ||
Sbjct 59196 AAGGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATAGCA-CAAAAGCTACC 59254
Query 19071 AGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATC 19130
|||||| || || ||||| ||||| || ||| | ||| || || || |||
Sbjct 59255 AGAAAATAAGATTCCTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTATC 59314
Query 19131 ATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190
| ||| |||||||| |||||| || ||||| ||||| || || ||
Sbjct 59315 ACAATTC---ATCCATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGA 59371
Query 19191 TATAGAATTAAATAGATACAT---ACGCTCATCTGTATCTTTAACATATGCATCTATCAA 19247
|| | | ||| || ||| ||| || | | || ||| |||| ||| || |
Sbjct 59372 GATTGCTTCAAAAAG---CATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAG 59428
Query 19248 TAAACTGTACATTTCTGA--ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACAT 19305
||| || | || ||| | ||| || | ||| |||||||| ||||| | ||| | |
Sbjct 59429 TAA--TGAATATGTCTCATTATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATT 59486
Query 19306 CTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATT 19365
|| ||||||| ||| |||| ||| ||| ||| || | |||| ||||| |||| ||
Sbjct 59487 CTAGCTTCTGGTATTTGTATTTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATA 59546
Query 19366 CCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT 19425
|||||||| || |||||||| |||| |||| ||| ||||| ||| ||||| || ||
Sbjct 59547 CCATCACTTGCAGCAAAAAAGGCTAGAACATATTTGATAAAGTGTCTTTCAG--GATCTT 59604
Query 19426 AATGTATT--CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAG 19483
| | || |||||| | ||||| | |||||| | ||||||| |||||| |
Sbjct 59605 TAAGACTTTCCCAATCTCTGGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATG 59664
Query 19484 AAGCCTCTGCTTTTTTATACATGTTCCATATATC 19517
| || || |||||||||||||| ||| |||||
Sbjct 59665 ATGCTTCAGCTTTTTTATACATTGACCAAATATC 59698
>seq290
Length=478353
Score = 232 bits (256), Expect = 8e-56
Identities = 649/987 (66%), Gaps = 34/987 (3%)
Strand=Plus/Plus
Query 47883 ATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCA 47942
|||||||| |||||||| || || | |||| | | |||| |||| |||||||| |
Sbjct 253961 ATAGATGCCAGATTACAAACTGCAATTTCATCTCCACTAGTGTATTCCATTATTTCTGTG 254020
Query 47943 CATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA-TTNNNNTTGTTACATGC 48001
|||| |||| | ||||| |||||||| | || ||| || | || || ||
Sbjct 254021 CATAAGTTACTTGAGACAATAGTTCCCAAATTCTTTTGGTTACTTTTCCTATTTGCA-GC 254079
Query 48002 GTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATT-CAATGATAGATTTCC 48060
||||| ||| ||||| || ||||| ||||| || |||| | |||| || | ||
Sbjct 254080 ATCCTTATAACAAATAAATGGCGTTCCCGTTTCAATTTGAGCCTGCAATATTAAAAA-CC 254138
Query 48061 AAA---------CAGTCCTAGCCTTTATAACA-GCTCTAGCTTTATTATCATGTTCGTAT 48110
||| | || | | |||| | || || || | ||| ||||||
Sbjct 254139 AAAGTTTTTGCGCTTTCATGGTCTTTCTCCCACGCCCTTGTTTT----------TCGTAT 254188
Query 48111 TTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTA 48170
| || || ||| ||| ||||| || | |||| | || || || || |
Sbjct 254189 TCTTCGTACAATTTCCTAAACTCATCACCCCAAACATCCTGCAATCCTCTGCACTCGTCC 254248
Query 48171 GGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATC 48230
|| |||||||| | |||||| | ||| |||| || || |||||||| ||| || | |
Sbjct 254249 GGGCACATCAAGGTCCAATCTTGATCCTTTTCAACCCTCTCCATAAATAGATCAGGAACC 254308
Query 48231 CAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGT 48290
||||| || ||| | || | | ||| | ||||| || || || || ||| |
Sbjct 254309 CAAAGGGCAGGAAAGAGGTCACGACATCTCATCTCTTCCTTTCCGTGGTTTTTTCTAATT 254368
Query 48291 TCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGT 48350
|||| ||| || | | || |||||||||||| ||||| ||||| || |||||
Sbjct 254369 TCAATAAACTCTACAACGTCCAAATGCCATGGTTCCAAATAAATTGCAATAGCACCTTTA 254428
Query 48351 CGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGG 48410
||||| ||| |||||||| ||||| || ||||||| |||||||| | | ||||||
Sbjct 254429 CGTTTCCCACCGCCTTGATCAATATACCTAGCAGTATCATTATAAACGCGCAGCATTGGA 254488
Query 48411 ACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTA 48470
| | ||||| || | ||||||||||| |||||| ||| | |||| ||||||
Sbjct 254489 ATTAGTCCATTAGACTTCCCATTGGTTCCTCGAATATATGAACCAGTTCCTCTAATATTA 254548
Query 48471 CTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA-GAGCACACCGTTTA---AG 48526
|| | || | || | |||||||| || | | | || || ||||| |||| ||
Sbjct 254549 CTTACTGCCACCCCAAGACCACCTG-CAGTCTTGCTAATATTTGCACA---TTTAGTTAG 254604
Query 48527 GGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACAT 48586
|| ||| |||| || | ||| || ||| || | | | ||| ||| |||||
Sbjct 254605 CGTGTCAAAAATACCGTTTATTGAGTCTTCTGGAATTCTGAGCAAAAAGCAAGATGACAT 254664
Query 48587 TTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTC 48646
||| || | ||||||||||| || | ||| || | ||||| |||| |||| |
Sbjct 254665 TTGTGGTCGTGGTGTTCCTGAATTGAAAAGTGTAGGTGTAGCATGTGTAAAATATTTTTG 254724
Query 48647 TGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGA 48706
|| | || | ||||| |||| | ||| || ||||| | ||||||||| |||
Sbjct 254725 CGACATTAACTCGTATGTCTCAAGAGCAGCTTCAATATCACCACAATGTATACCACAAGA 254784
Query 48707 TACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATA 48766
|| ||||||| | || || |||||||| |||| |||||||| ||| | | ||||||
Sbjct 254785 AACTCGCATTAGAAGATGCTGTGGTCTTTCCACAACTTTGTTATCAATTCTGAGAAGATA 254844
Query 48767 TGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAAT-AA 48825
||| |||| | || || || ||||||| | ||| || || || | | ||| ||
Sbjct 254845 GGATCTTTCTAGAGTCTTGAAGGCAAAATAATCATATTCGAAATC-TTTTGAAAAATCAA 254903
Query 48826 TTGATGAATTTATTCTTTCCTTATGTT 48852
|| ||||| |||||||| |||| ||
Sbjct 254904 TTTTCGAATTAATTCTTTCTTTATTTT 254930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562102806514920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |