Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq223 268 1e-66 seq290 232 8e-56 >seq223 Length=111419 Score = 268 bits (296), Expect = 1e-66 Identities = 592/874 (68%), Gaps = 29/874 (3%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||||||||| |||| ||||| ||||||| ||||| |||||||| ||||| || | Sbjct 58841 CATTACTCCAGCCATTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTG 58900 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 | ||| ||| ||||| ||||||| ||||| | |||||||||||||| || | Sbjct 58901 GAGTGAAATAAGGTCCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATC 58960 Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCAC---A 18833 ||| | || ||||||||||| |||||||||| ||||||| || | |||| | | Sbjct 58961 TAAAGCAAAAAGTAGTCTATCAGCTACAAATTCAATATAT-TGAGC--CATAAGTCTGGA 59017 Query 18834 ATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTAC 18893 |||||| || || | | |||||| || | ||| ||| || | | ||| | || || Sbjct 59018 ATTCATACCAATAAGATCAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAAC 59077 Query 18894 TGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAG--AAGATGTTTA 18951 || ||||| || || | |||||| || | || || | ||| |||| Sbjct 59078 AGCTTCTGAGATGATTTGTTGTACTCTAGAAG--TTGGTAGTTTAAATTTAAGGGCTTTA 59135 Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 | || || || ||||||||| ||||||||| || || | || || | ||| || ||| Sbjct 59136 TAGATTAAGCAAGCAAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAA 59195 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CC 19070 || || | |||||||| ||||| | |||||| | ||| || |||| | |||| | | || Sbjct 59196 AAGGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATAGCA-CAAAAGCTACC 59254 Query 19071 AGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATC 19130 |||||| || || ||||| ||||| || ||| | ||| || || || ||| Sbjct 59255 AGAAAATAAGATTCCTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTATC 59314 Query 19131 ATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190 | ||| |||||||| |||||| || ||||| ||||| || || || Sbjct 59315 ACAATTC---ATCCATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGA 59371 Query 19191 TATAGAATTAAATAGATACAT---ACGCTCATCTGTATCTTTAACATATGCATCTATCAA 19247 || | | ||| || ||| ||| || | | || ||| |||| ||| || | Sbjct 59372 GATTGCTTCAAAAAG---CATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAG 59428 Query 19248 TAAACTGTACATTTCTGA--ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACAT 19305 ||| || | || ||| | ||| || | ||| |||||||| ||||| | ||| | | Sbjct 59429 TAA--TGAATATGTCTCATTATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATT 59486 Query 19306 CTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATT 19365 || ||||||| ||| |||| ||| ||| ||| || | |||| ||||| |||| || Sbjct 59487 CTAGCTTCTGGTATTTGTATTTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATA 59546 Query 19366 CCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT 19425 |||||||| || |||||||| |||| |||| ||| ||||| ||| ||||| || || Sbjct 59547 CCATCACTTGCAGCAAAAAAGGCTAGAACATATTTGATAAAGTGTCTTTCAG--GATCTT 59604 Query 19426 AATGTATT--CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAG 19483 | | || |||||| | ||||| | |||||| | ||||||| |||||| | Sbjct 59605 TAAGACTTTCCCAATCTCTGGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATG 59664 Query 19484 AAGCCTCTGCTTTTTTATACATGTTCCATATATC 19517 | || || |||||||||||||| ||| ||||| Sbjct 59665 ATGCTTCAGCTTTTTTATACATTGACCAAATATC 59698 >seq290 Length=478353 Score = 232 bits (256), Expect = 8e-56 Identities = 649/987 (66%), Gaps = 34/987 (3%) Strand=Plus/Plus Query 47883 ATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCA 47942 |||||||| |||||||| || || | |||| | | |||| |||| |||||||| | Sbjct 253961 ATAGATGCCAGATTACAAACTGCAATTTCATCTCCACTAGTGTATTCCATTATTTCTGTG 254020 Query 47943 CATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA-TTNNNNTTGTTACATGC 48001 |||| |||| | ||||| |||||||| | || ||| || | || || || Sbjct 254021 CATAAGTTACTTGAGACAATAGTTCCCAAATTCTTTTGGTTACTTTTCCTATTTGCA-GC 254079 Query 48002 GTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATT-CAATGATAGATTTCC 48060 ||||| ||| ||||| || ||||| ||||| || |||| | |||| || | || Sbjct 254080 ATCCTTATAACAAATAAATGGCGTTCCCGTTTCAATTTGAGCCTGCAATATTAAAAA-CC 254138 Query 48061 AAA---------CAGTCCTAGCCTTTATAACA-GCTCTAGCTTTATTATCATGTTCGTAT 48110 ||| | || | | |||| | || || || | ||| |||||| Sbjct 254139 AAAGTTTTTGCGCTTTCATGGTCTTTCTCCCACGCCCTTGTTTT----------TCGTAT 254188 Query 48111 TTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTA 48170 | || || ||| ||| ||||| || | |||| | || || || || | Sbjct 254189 TCTTCGTACAATTTCCTAAACTCATCACCCCAAACATCCTGCAATCCTCTGCACTCGTCC 254248 Query 48171 GGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATC 48230 || |||||||| | |||||| | ||| |||| || || |||||||| ||| || | | Sbjct 254249 GGGCACATCAAGGTCCAATCTTGATCCTTTTCAACCCTCTCCATAAATAGATCAGGAACC 254308 Query 48231 CAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGT 48290 ||||| || ||| | || | | ||| | ||||| || || || || ||| | Sbjct 254309 CAAAGGGCAGGAAAGAGGTCACGACATCTCATCTCTTCCTTTCCGTGGTTTTTTCTAATT 254368 Query 48291 TCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGT 48350 |||| ||| || | | || |||||||||||| ||||| ||||| || ||||| Sbjct 254369 TCAATAAACTCTACAACGTCCAAATGCCATGGTTCCAAATAAATTGCAATAGCACCTTTA 254428 Query 48351 CGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGG 48410 ||||| ||| |||||||| ||||| || ||||||| |||||||| | | |||||| Sbjct 254429 CGTTTCCCACCGCCTTGATCAATATACCTAGCAGTATCATTATAAACGCGCAGCATTGGA 254488 Query 48411 ACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTA 48470 | | ||||| || | ||||||||||| |||||| ||| | |||| |||||| Sbjct 254489 ATTAGTCCATTAGACTTCCCATTGGTTCCTCGAATATATGAACCAGTTCCTCTAATATTA 254548 Query 48471 CTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA-GAGCACACCGTTTA---AG 48526 || | || | || | |||||||| || | | | || || ||||| |||| || Sbjct 254549 CTTACTGCCACCCCAAGACCACCTG-CAGTCTTGCTAATATTTGCACA---TTTAGTTAG 254604 Query 48527 GGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACAT 48586 || ||| |||| || | ||| || ||| || | | | ||| ||| ||||| Sbjct 254605 CGTGTCAAAAATACCGTTTATTGAGTCTTCTGGAATTCTGAGCAAAAAGCAAGATGACAT 254664 Query 48587 TTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTC 48646 ||| || | ||||||||||| || | ||| || | ||||| |||| |||| | Sbjct 254665 TTGTGGTCGTGGTGTTCCTGAATTGAAAAGTGTAGGTGTAGCATGTGTAAAATATTTTTG 254724 Query 48647 TGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGA 48706 || | || | ||||| |||| | ||| || ||||| | ||||||||| ||| Sbjct 254725 CGACATTAACTCGTATGTCTCAAGAGCAGCTTCAATATCACCACAATGTATACCACAAGA 254784 Query 48707 TACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATA 48766 || ||||||| | || || |||||||| |||| |||||||| ||| | | |||||| Sbjct 254785 AACTCGCATTAGAAGATGCTGTGGTCTTTCCACAACTTTGTTATCAATTCTGAGAAGATA 254844 Query 48767 TGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAAT-AA 48825 ||| |||| | || || || ||||||| | ||| || || || | | ||| || Sbjct 254845 GGATCTTTCTAGAGTCTTGAAGGCAAAATAATCATATTCGAAATC-TTTTGAAAAATCAA 254903 Query 48826 TTGATGAATTTATTCTTTCCTTATGTT 48852 || ||||| |||||||| |||| || Sbjct 254904 TTTTCGAATTAATTCTTTCTTTATTTT 254930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562102806514920