Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq223 235 6e-57 >seq223 Length=111419 Score = 235 bits (260), Expect = 6e-57 Identities = 570/854 (67%), Gaps = 17/854 (2%) Strand=Plus/Plus Query 36886 TTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTT 36945 |||| ||||||||||||| ||||||| |||||||| || |||| ||||| ||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 36946 CCATAAAATCAAATGGATTAGATGTATTATATATAGTACT-ACATGATAATTCCTTCAGA 37004 |||| ||||||| ||||| | ||||||||| | |||| ||| | || Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATC-TAAAGCAAAAAGT 58973 Query 37005 AGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGT 37064 || ||||| || |||||||| || |||| | ||| ||| | || |||||||| || Sbjct 58974 AGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGA 59033 Query 37065 TTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATA 37124 | || |||| | ||| ||| || | |||| | ||||| ||| | || Sbjct 59034 TCAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGATT 59093 Query 37125 T----TAA-CAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATG 37179 | || | | || || | |||| | |||| | |||| | | ||| || | Sbjct 59094 TGTTGTACTCTAGAAGTTGGT-AGTTT----AAATTTAAGGGCTTTATAGATTAAGCAAG 59148 Query 37180 CAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTG 37239 |||||||| ||||| |||||||| | || || | ||| || |||||||| | ||| | Sbjct 59149 CAAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAG 59208 Query 37240 GCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAAGAAAATA 37298 |||| | || | |||||||| |||||| || || |||||| | |||||||| || || Sbjct 59209 GCATAAGTCCACGTTTTTTAAGCCAAAAAATAGCA-CAAAAGCTACCAGAAAATAAGATT 59267 Query 37299 CCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATC 37358 ||||||||||| ||| | | || | | | |||| | |||| | | ||| Sbjct 59268 CCTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAAGAT---CTATCACAATTCATC 59324 Query 37359 CAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAG 37418 ||||| ||| ||| ||||||||| |||||| | ||| ||||||| || Sbjct 59325 CATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAAA 59384 Query 37419 AGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCA 37478 || | | ||||| | | || || ||||| ||||||| ||||| ||| | ||| Sbjct 59385 AGCATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGAATATGTCTCA 59444 Query 37479 GAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGA 37538 || || | ||||||||| || |||||| ||||| | |||||||| | || ||| Sbjct 59445 TTATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCTTCTGGTATTTGT 59504 Query 37539 ACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAG 37598 | || ||| ||| | || |||||||| |||| || |||||||| || ||||| Sbjct 59505 ATTTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAAA 59564 Query 37599 AAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTA 37658 || || ||||||||||| ||||| ||||||||| || | | ||| |||||| | Sbjct 59565 AAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCCCAATCTCTG 59624 Query 37659 ATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGTTTATAC 37718 ||||| |||||||| ||| ||| |||||| ||| || ||||||| Sbjct 59625 GAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATAC 59684 Query 37719 ATCGTCCAAATATC 37732 || | ||||||||| Sbjct 59685 ATTGACCAAATATC 59698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592310484422120