Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq445 161 8e-35
seq849 156 3e-33
>seq445
Length=134117
Score = 161 bits (178), Expect = 8e-35
Identities = 161/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| | |||||| || || || |||||||| || | | ||||||| |||| |||
Sbjct 79428 ACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGATAAAGTTCTGCCATCTTCC 79369
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|||||||| |||||||| |||| |||||||||||| || |||||||| ||||| || ||
Sbjct 79368 AATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGGAATGCCCTCTTTGTCCTGG 79309
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| ||| || ||| | || | ||||| || | || ||||| | |||| || ||
Sbjct 79308 ATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGCTCAACTTCCAATGTGATGGTCTTT 79249
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| ||||||||||||||||| || |||||
Sbjct 79248 CCTGTTAAAGTTTTTACAAAAATTTGCAT 79220
>seq849
Length=33325
Score = 156 bits (172), Expect = 3e-33
Identities = 172/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
|||| ||||| | | || || ||||| | || ||||||||||| ||||||||||| |
Sbjct 19167 TTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAG 19226
Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360
|| |||||| | || || ||||| || |||||||| |||||||| ||||| ||||| |
Sbjct 19227 AGAGAGTTCTTCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTG 19286
Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420
|||| ||||| || |||||||| ||| ||| ||| | || | || || || | || |
Sbjct 19287 GAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCTA 19346
Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||| | || | || || || || |||||||| ||||| ||||||||
Sbjct 19347 CTTCCAATGTTATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395
Score = 149 bits (164), Expect = 5e-31
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317
|| ||||| || | || ||||| ||||| ||||||||||| | | |||||| ||||
Sbjct 19412 AAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCAGATAGAGTTCTTCCATCC 19471
Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377
|| | |||||| ||||| || |||||||| ||||| ||||| ||||| ||||| || |||
Sbjct 19472 TCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCT 19531
Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437
||||| ||| ||| ||| | || | || || || | || ||||| | |||| ||
Sbjct 19532 TGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTGATAGTC 19591
Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || || |||||||| ||||| ||||||||
Sbjct 19592 TTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623
Score = 149 bits (164), Expect = 5e-31
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317
|| || ||||| | || ||||| ||||| ||||||||||| | || |||||| | ||
Sbjct 19640 AATACCAAATGTAAAGTGGATTCCTTTTGGATATTGTAATCAGAGAGAGTTCTTCCGTCC 19699
Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377
|| ||||| || || ||||| |||||||| |||||||| || ||||| ||||| ||||||
Sbjct 19700 TCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTATCT 19759
Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437
||||| ||| ||| ||| | || | || || || | || ||||| | |||| ||
Sbjct 19760 TGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTGATAGTC 19819
Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || || ||||| || ||||| ||||||||
Sbjct 19820 TTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 19851
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396274280314521
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |