Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq445 161 8e-35 seq849 156 3e-33 >seq445 Length=134117 Score = 161 bits (178), Expect = 8e-35 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | |||||| || || || |||||||| || | | ||||||| |||| ||| Sbjct 79428 ACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGATAAAGTTCTGCCATCTTCC 79369 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| |||||||| |||| |||||||||||| || |||||||| ||||| || || Sbjct 79368 AATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGGAATGCCCTCTTTGTCCTGG 79309 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| || ||| | || | ||||| || | || ||||| | |||| || || Sbjct 79308 ATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGCTCAACTTCCAATGTGATGGTCTTT 79249 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||||||||||||| || ||||| Sbjct 79248 CCTGTTAAAGTTTTTACAAAAATTTGCAT 79220 >seq849 Length=33325 Score = 156 bits (172), Expect = 3e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| | | || || ||||| | || ||||||||||| ||||||||||| | Sbjct 19167 TTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAG 19226 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || |||||| | || || ||||| || |||||||| |||||||| ||||| ||||| | Sbjct 19227 AGAGAGTTCTTCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTG 19286 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || |||||||| ||| ||| ||| | || | || || || | || | Sbjct 19287 GAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCTA 19346 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | || | || || || || |||||||| ||||| |||||||| Sbjct 19347 CTTCCAATGTTATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395 Score = 149 bits (164), Expect = 5e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || ||||| || | || ||||| ||||| ||||||||||| | | |||||| |||| Sbjct 19412 AAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCAGATAGAGTTCTTCCATCC 19471 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || | |||||| ||||| || |||||||| ||||| ||||| ||||| ||||| || ||| Sbjct 19472 TCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCT 19531 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| ||| ||| ||| | || | || || || | || ||||| | |||| || Sbjct 19532 TGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTGATAGTC 19591 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || |||||||| ||||| |||||||| Sbjct 19592 TTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623 Score = 149 bits (164), Expect = 5e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || ||||| | || ||||| ||||| ||||||||||| | || |||||| | || Sbjct 19640 AATACCAAATGTAAAGTGGATTCCTTTTGGATATTGTAATCAGAGAGAGTTCTTCCGTCC 19699 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || ||||| || || ||||| |||||||| |||||||| || ||||| ||||| |||||| Sbjct 19700 TCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTATCT 19759 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| ||| ||| ||| | || | || || || | || ||||| | |||| || Sbjct 19760 TGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTGATAGTC 19819 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| || ||||| |||||||| Sbjct 19820 TTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 19851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396274280314521