Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq849 143 2e-29 seq445 136 3e-27 >seq849 Length=33325 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || | ||| |||||||||| ||| |||||||| |||||||||||||| Sbjct 19169 CCACCTCTAAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAGAG 19228 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| |||| || || || || || ||||| |||| || ||||| || | ||| Sbjct 19229 AGAGTTCTTCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTGGA 19288 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||||||| ||| ||| | | | ||||| | ||| || Sbjct 19289 ATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCTACT 19348 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||||||||||||||| |||||||||||||| Sbjct 19349 TCCAATGTTATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || | ||| |||||||||| ||| || ||||| |||||||||||||| Sbjct 19625 CCACCTCTGAGTCTCAATACCAAATGTAAAGTGGATTCCTTTTGGATATTGTAATCAGAG 19684 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| |||| || || || || || ||||| |||| || |||||||| | ||| Sbjct 19685 AGAGTTCTTCCGTCCTCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGGTGGA 19744 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||||| ||| ||| | | | ||||| | ||| || Sbjct 19745 ATTCCTTCCTTATCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACT 19804 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||| |||||||| || |||||||||||||| Sbjct 19805 TCCAATGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 19851 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| ||| || || |||| ||| || ||||| ||||||||||||||| Sbjct 19397 CCACCTCTGAGCCTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCAGAT 19456 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | || || | ||||| || || || |||| || ||||| || | ||| Sbjct 19457 AGAGTTCTTCCATCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGTGGA 19516 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||||||| ||| ||| | | | ||||| | ||| || Sbjct 19517 ATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACT 19576 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||| ||||||||||| |||||||||||||| Sbjct 19577 TCCAATGTGATAGTCTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623 >seq445 Length=134117 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || | || ||||||||||| || ||| || ||||||||||| |||||| Sbjct 79446 CCACCTCTAAGTCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGAT 79387 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| | || ||||| ||||| || ||||| ||||| ||||||||||| | ||| Sbjct 79386 AAAGTTCTGCCATCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGGA 79327 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||| ||||| |||||| || ||| | | | || || | ||| || Sbjct 79326 ATGCCCTCTTTGTCCTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGCTCAACT 79267 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| || || || ||||| || ||||||||||||||||| |||||| Sbjct 79266 TCCAATGTGATGGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCATC 79219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380933639796519