Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq445 100 2e-16 >seq445 Length=134117 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || |||||||| ||||||||||| ||||| || || ||||| || ||| || ||| Sbjct 79217 AAGATGCAAATTTTTGTAAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAGCCT 79276 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | || | ||| ||| ||| ||||||||||| | || ||| Sbjct 79277 TCCGACACCATTGAGAATGTTAAGGCAAAGATCCAGGACAAAGAGGGCATTCCACCTGAT 79336 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 |||||| | || |||||||| || || |||||||||||| | |||| | | || || Sbjct 79337 CAACAGCGTCTGATCTTTGCAGGAAAGCAATTGGAAGATGGCAGAACTTTATCTGACTAC 79396 Query 28731 AACATTCAAAAAGAATCTAC 28750 || ||||| || || ||||| Sbjct 79397 AATATTCAGAAGGAGTCTAC 79416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425400377518287