Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq113 291 5e-73 seq401 239 3e-57 seq579 228 5e-54 seq224 129 4e-24 seq849 125 5e-23 seq335 114 8e-20 seq445 104 2e-16 seq290 100 2e-15 >seq113 Length=180777 Score = 291 bits (322), Expect = 5e-73 Identities = 654/971 (67%), Gaps = 21/971 (2%) Strand=Plus/Plus Query 475310 GGAACTCATGACGTAACTTTACTATCACTCGAAGATGGTCTTTTCTCTGTAAGAGCAACA 475369 || ||| ||| ||| | ||| || | | || |||||| |||| || | || || Sbjct 160527 GGTACTTTTGATGTATCATTATTAACTATTGAGGATGGTATTTTTGAAGTTAAGGCTACT 160586 Query 475370 GCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGTATCATGGTGTGTT 475429 ||||| || | || | ||||||||||| |||||||| ||||||||| || ||||| Sbjct 160587 GCTGGTGACACTCACTTGGGTGGTGAAGACTTTGATAACAGACTTGTAGAATTCTGTGTA 160646 Query 475430 GAAGATTTCAAGAGGAAAAATAAAGTT---GATCTTTCAACATCTGCTAAAGCATTAAGA 475486 ||||||| ||||| || |||| || | || | | ||| ||||| ||| |||||| Sbjct 160647 CAAGATTTTAAGAGAAAGAATAGAGGTATGGACTTAACTACAAATGCTAGAGCTTTAAGA 160706 Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 | | |||||| || || ||||| ||| || || | || ||| | || || ||||| Sbjct 160707 AGATTAAGAACTCAATGCGAGCGTGCAAAGAGAACTTTATCATCTTCCACCCAGGCTACT 160766 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 ||||| | ||||| |||| ||||| ||||||||| | |||| || |||| | Sbjct 160767 ATTGAATTAGATTCGCTTTACGAAGGTATTGATTATTCAGTTGCCATTAGTAGAGCTAGA 160826 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 ||||| || | ||| ||||| || | ||| | | || ||||| |||||||| Sbjct 160827 TTTGAGGAACTCTGTGCTGATTATTTCCGTGCAACTTTAGCTCCAGTTGAGAAAGTTCTC 160886 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 | ||| || | ||||| | || ||||| |||| | || || || || || Sbjct 160887 AAGGATGCTGGTATGGACAAGAGATCTGTACATGATGTTGTCTTAGTTGGTGGCTCTACC 160946 Query 475727 AGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAGTTAAATG-A 475785 | ||||||||| | | || || || || || ||||| || | || | Sbjct 160947 CGTATTCCAAAAGTTCAGGCTTTGATTCAGGAATTCTTCAACGGTAAGGAGCCA--TGCA 161004 Query 475786 AAGTG-TAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTAT 475844 ||| | ||||| |||||||||||||| ||||| |||||||| ||||| || || ||| Sbjct 161005 AAGCAATTAATCCAGATGAAGCTGTTGCTTATGGTGCTGCTGTTCAAGCTGCAATCTTAA 161064 Query 475845 CAGGT---CAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTT 475901 ||| ||||| | | || | |||| ||| || || ||||| | | Sbjct 161065 ATGGTGAACAATCCTCTGCCGTTCAGGATC-TCTTGTTGTTG--GATGTTGCTCCATTAT 161121 Query 475902 CATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTA 475961 || | ||| | ||||| | ||| || ||||||| || |||||||| | ||||| ||| Sbjct 161122 CACTCGGTTTAGAAACTGCTGGTGGTGTTATGACCAAGCTTATTGAGCGTAATACAACTA 161181 Query 475962 TCCCATGCAAAAAAT-CAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACC 476020 ||||| ||||| || || |||| || | |||||| ||||||| |||| ||| Sbjct 161182 TCCCA-GCAAAGAAGACACAAGTCTTCACTACTTATGCTGATAACCAAAGTGGTGTCTTA 161240 Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080 |||||| ||| ||| ||||| ||| | ||||| || || || || |||| || Sbjct 161241 ATCCAAGTCTATGAGGGTGAGAGAGCTATGACTAAGGACAACCACCTCCTCGGAAAATTC 161300 Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140 ||||||| ||||| || || || || || || || || || ||||| || || |||||| Sbjct 161301 CATCTTGATGGTATCCCACCAGCACCGAGGGGTGTGCCACAGATTGAGGTCACCTTTGAT 161360 Query 476141 ATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAAC---AAGAGT 476197 |||||||| |||||||| | ||||| ||||| |||||| || | | ||||| Sbjct 161361 ATTGATGCCAATGGTATCTTGAATGTCTCTGCTGTTGATAA---GAGCACCGGAAAGAGC 161417 Query 476198 AAAAATATAACTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATG 476257 | || || || ||||| ||| || |||||||| | | || | ||| |||| ||| Sbjct 161418 AGCAAGATTACCATTACTAACGATAAGGGTAGATTATCAAAGGATGATATTGAACGCATG 161477 Query 476258 GTTGATGAAGC 476268 ||| |||| || Sbjct 161478 GTTAATGATGC 161488 Score = 235 bits (260), Expect = 4e-56 Identities = 418/604 (69%), Gaps = 18/604 (3%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||||||||||||||| || || ||| ||||| | ||| ||| ||||| || Sbjct 159933 GCTATTGGTATTGATTTAGGTACCACATACTCATGTGTTGGTGTATGGAGAAATGATACG 159992 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 ||||| || | | ||||| |||||||| | ||||||||||||||||| | ||||| Sbjct 159993 GTAGATATTGTCCCAAATGATCAAGGTAACCGTACAACACCATCATATGTAGCATTTACA 160052 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 |||||||| | ||| ||||| ||||| || || |||||| ||| ||||| | ||| Sbjct 160053 GAAACTGAGCGTCTCATTGGTGATGCAGCAAAGAATCAAGTTGCTAGAAATCCAGAGAAT 160112 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCA--CTGTCCAAT 474566 || |||||||||||||| | | |||||| | || ||||||| |||| | || ||| Sbjct 160113 ACAGTTTTTGATGCTAAACGTCTTATTGGTAGGAAATTTGATG--ACCAGGCAGTACAAA 160170 Query 474567 CTGATATGCGTCATTGGCCTTTTAAGGT-GATAAATGT----TGG--TGGTAAACCATAT 474619 ||||||| ||| ||||| ||||| || | || | || || | || ||| Sbjct 160171 GTGATATGACTCACTGGCCATTTAAAGTAGTTAGAGGTCCAAAGGACAAGCCAATCATTA 160230 Query 474620 ATAGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATG 474679 | |||| || ||||| | || |||| | || | |||||| | ||| Sbjct 160231 GTGTAAGCTAT----TTGGGTGAGAAGAAGGAATTCCATGCCGAGGAGATTTCTGCTATG 160286 Query 474680 GTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCA 474739 |||||| || ||||| ||| | | |||| | || | | | | |||| Sbjct 160287 GTTTTACAAAAGATGAAGGAAATCTCTGAAGCATACTTGGGTCGCCCAATTAAGAATGCT 160346 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 ||| ||||||| ||||| || || ||||| || |||||||||||||| || ||||| || Sbjct 160347 GTAGTTACTGTACCAGCTTACTTCAATGACTCACAACGTCAAGCAACAAAGGATGCTGGT 160406 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 |||||| ||| | ||||| | | || |||||||| ||||| ||||| || ||||| Sbjct 160407 GCAATTGCTGGTTTGAATGTAATGAGAATCATTAATGAGCCAACTGCAGCTGCTATTGCT 160466 Query 474860 TATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATT---GTGGA 474916 || ||||||||||| || | || ||||||||| ||||| |||| |||| Sbjct 160467 TACGGTCTTGATAAAAAAGGAACCGGTGAGAGAAATGTTTTGATCTTCGATTTAGGTGGT 160526 Query 474917 GGTA 474920 |||| Sbjct 160527 GGTA 160530 >seq401 Length=300945 Score = 239 bits (264), Expect = 3e-57 Identities = 533/787 (68%), Gaps = 51/787 (6%) Strand=Plus/Minus Query 296928 ACATTCTTATCCTTTTTGTTATAGAACAGATACTCCACTTATTTTTAAAATTTGTTC-TG 296986 |||||||||||||||||||| ||| | ||||| || ||| | | | ||||| | Sbjct 111852 ACATTCTTATCCTTTTTGTTGGAGATCTGATACACCT-TTACAATATAGAGCTGTTCCTT 111794 Query 296987 GTTGGTTTTTAAACGCATCaaatgaaaaattcagagaaaaaatgatgattaataattcta 297046 |||||| | || | |||| || | ||||| | | | ||||||||| | Sbjct 111793 CCTGGTTTATTAATGT------TGAATCTTTAAAAGAAAGATTATTAATTAATAATGAAA 111740 Query 297047 aaataaattGGATGCCATCAAATATTGGTACAAATCAT---TTTGATAATTGGTTACAAT 297103 ||| | |||||| || ||| || || | | | ||| |||||||||||||| Sbjct 111739 AAACTAGTTGGATTCCT---AATTATGTTAAAGAGAAAAGATTTCATAATTGGTTACAAG 111683 Query 297104 CTTCAGTGGATTGGTGTATTTCAAGAAGTA---GATATTGGGGAACACCAATTCCAATTT 297160 | | ||||||||| | ||| ||| ||| ||||||||||||||| || || | Sbjct 111682 ATGCTAGAGATTGGTGTGT---AAGTCGTAATCGATTTTGGGGAACACCAATACCTATAT 111626 Query 297161 GGAAATCTGATGATGGTGAAGAAATAATTTGTATTGGTTCACTTGAAGAATTAAAAGAAT 297220 || ||| || ||| | | || | ||||||||| | |||||||| ||| | Sbjct 111625 GGGTATCAGAAGATTATACTGTTATTAAATGTATTGGTAGTATAGAAGAATTGAAATCTT 111566 Query 297221 T---------TTCAGGAATTGATAATATTAATGATTTACATATTGATAAAATTGATCAAA 297271 | || | || ||| | |||| |||| ||||| | || |||||| | | Sbjct 111565 TGGCATCTAATTTAAAAAATGAAGAAATTACTGATATACATCGTCATTTTATTGATTATA 111506 Query 297272 TAAAAATTCCTTCTCGTAAAGGA-AAAGGCATG-----TTATCTCGTGTTACCGGTGTTT 297325 | |||||||| || | |||| ||| || ||| | || | |||| Sbjct 111505 TTGAAATTCCTGATCCAAGAGGAGAAAATTATCCTCCATTAAAAAGAATTGAAGAAGTTT 111446 Query 297326 TAGATTGTTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATTCATTATCCTTTTGAAA 297385 | ||||||||||||||||| ||||| |||||||||| ||| ||||||| ||||||| Sbjct 111445 TTGATTGTTGGTTTGAATCTGGTTCAATGCCTTATGCATCTATTAATTATCCATTTGAAA 111386 Query 297386 ATTCCGAAATTTTAGACACTTCACAAGATTATATTGCAGATTTTATAACAGAATCAATTG 297445 || ||| | || ||| | | ||| | ||| |||||| | ||| | | | Sbjct 111385 ATAAAGAATTATTTAACAAT-----ATATT-TCCTGCTGATTTTGTTGGTGAAGGATTAG 111332 Query 297446 ATCAAACAAGAGGTTGGTTTTATACTTTATTAGTTCTTTCTACAGCTATATTTAACAAAC 297505 ||||||||||||| ||||||||||||||| | || | |||||||| ||||| | ||| Sbjct 111331 ATCAAACAAGAGGATGGTTTTATACTTTAATGGTATTATCTACAGCATTATTTGATCAAC 111272 Query 297506 CAGCATTTAAAAATGTAATTGTTACAGGAATTGTTAACGCAGCTGATGGACAAAAAATGT 297565 |||| ||||||||| | ||||||| || | ||| ||| ||||||| ||||||||| Sbjct 111271 CAGCTTTTAAAAATATTATTGTTAATGGTTTAGTTTTAGCATCTGATGGTAAAAAAATGT 111212 Query 297566 CAAAAAG--TAAAGGTAATTATCCTGATCCA-AATATTTTGATGGATAAATATGGTGCAG 297622 ||||||| |||| ||||||||||||||| | || ||| | ||||||||||||||| Sbjct 111211 CAAAAAGATTAAAA--AATTATCCTGATCCATTAGATATTG-TTAATAAATATGGTGCAG 111155 Query 297623 ATACTTTACGTCTTTATTTATTATCAA--CACCTGTAGTTAAAGCCGAATCAATTAAATT 297680 || ||||| | |||||| | || || |||| ||||| | ||| ||| | | | ||| Sbjct 111154 ATTCTTTAAG--ATTATTTTTAATTAATTCACCAGTAGTAAGAGCTGAAACTTTAAGATT 111097 Query 297681 TGATGAA 297687 | | ||| Sbjct 111096 TAAAGAA 111090 Score = 136 bits (150), Expect = 3e-26 Identities = 330/494 (67%), Gaps = 18/494 (4%) Strand=Plus/Minus Query 295795 GATGGACCTCCATTTGCTACAGGA--ACTATGCATTATGGACATATTTTAGTCTCAACTA 295852 |||||||| |||||||| |||||| || | |||||||| ||||| | | || Sbjct 112916 GATGGACCCCCATTTGCAACAGGATTACCA--CATTATGGTCATATACTTGCAGGTACAG 112859 Query 295853 TTAAAGATACCATGACTAGATATTTAACAATGAATGGTTATCAAGTTAATATGGGAATTG 295912 | |||||| | || |||||| ||| || || ||| | | | | || ||| Sbjct 112858 TCAAAGATGTAGTTACGAGATATGCAACTCAAAAAGGATATTATTGTGAAAGAAGATTTG 112799 Query 295913 GTTGGGATTGCCATGGAGTTCCAATTGAA-ATG---TTGGCTaaaaaaaCTATCGGATAT 295968 | |||||||| |||||| | ||| | ||| ||| ||| | |||| || | || Sbjct 112798 GATGGGATTGTCATGGATTACCAGTAGAACATGAAATTG-----ATAAACAATT--AAAT 112746 Query 295969 ATCACAAAGA---AAGATTTATTGGAATACGGTATTGATCGTCATAATGATATTTGTCGT 296025 || |||| | ||||| | ||| | | || |||||| ||||||| ||| | Sbjct 112745 ATTACAAGTAGGGAAGATGTTTTGAATAAAGGAATTGATTTCTATAATGAATCATGTAGA 112686 Query 296026 GATATGGTATTAAAATGTACTGATAAATGGTATTCTGATTTTGAGAGAATTGGAAGATGG 296085 || ||||||| || |||| | ||||| | | | || ||| ||||||||| Sbjct 112685 TCAATAGTATTAAGATATACTCAAGAATGGAAATTAACAGTAGAAAGAGTTGGAAGATTA 112626 Query 296086 ATTGATATTAATAATGAATATAAAACAATGGATAAAAATTTTATGGAATCTGTTATTTGG 296145 |||||| || |||||| ||||| ||| |||||| ||| |||||| || |||| ||| Sbjct 112625 ATTGATTTTGATAATGGATATAGAACTATGGATTTAAAGTTTATGCAAACTGTATGGTGG 112566 Query 296146 TCATTTAAACAACTTTATGAAAAGGAAATGATTTTTGAAGGTTATAAAGTTATGCCTTAT 296205 |||||||||||| | ||| ||| | | ||| | || ||||| ||| ||||| ||| Sbjct 112565 GTATTTAAACAACTCTTTGATAAGAATCTAGTTTATAGAGCTTATAGAGTGATGCCATAT 112506 Query 296206 TCTACTGGTTGCAATACACCATTATCTCATTTTGAGGCAAAACAAAATTATAAAGAGATT 296265 || || | || |||||| |||| ||||||| || ||||||||| || | Sbjct 112505 TCAACAGCATGTGCAACACCACTATCGAATTTTGAATGTAATTTAAATTATAAGGATGTA 112446 Query 296266 ATTGATCCATCTGT 296279 | ||||||||| || Sbjct 112445 AATGATCCATCAGT 112432 Score = 122 bits (134), Expect = 6e-22 Identities = 210/303 (69%), Gaps = 4/303 (1%) Strand=Plus/Plus Query 475884 TTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTA 475943 |||| || ||||| | || |||||| | ||||| | || || || | ||| || | Sbjct 206201 TTGATGTTACTCCTTTATCTTTAGGTATCGAAACTTTGGGTGGAGTTTTTACTCGACTAA 206260 Query 475944 TTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATA 476003 || | ||||| || | ||||| || || ||||||| |||||| | |||| Sbjct 206261 TTAATAGAAACACCACGATCCCCACTAAGAAGAGCCAAGTATTCTCCACTGCAGCGGATA 206320 Query 476004 ATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATA 476063 | ||||| || || | | || | || |||||| |||| || ||||||| Sbjct 206321 ACCAAACTCAGGTTGGAATTAAGGTTTTCCAGGGAGAAAGAGAATTTGCTGCTGATAATA 206380 Query 476064 ACAAACTTGGAACTTTT--AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCA 476121 | ||||||| ||| ||| || || |||||||| || || || ||||||||||| Sbjct 206381 AGTTACTTGGACAATTTGAAATGATG--GGAATTCCTCCAGCCCCTAGGGGAGTTCCTCA 206438 Query 476122 AATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||||||| ||||||||||||||||| ||||| ||| | |||||| |||| |||||| Sbjct 206439 AATTGAAGTAACTTTTGATATTGATGCGAATGGAATTATGAATGTTGGTGCTATTGATAA 206498 Query 476182 ATC 476184 || Sbjct 206499 GTC 206501 Score = 120 bits (132), Expect = 2e-21 Identities = 96/116 (83%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || ||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||| Sbjct 205453 GCTGTAATTACTGTGCCAGCCTATTTTAATGATTCTCAACGTCAAGCAACTAAGGACGCG 205512 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGC 474852 || || |||||| | ||||| | | || ||||| |||||||||||||| || Sbjct 205513 GGCTCTATAGCAGGTTTAAATGTGACAAGAATCATTAACGAACCAACAGCAGCAGC 205568 >seq579 Length=144132 Score = 228 bits (252), Expect = 5e-54 Identities = 390/559 (70%), Gaps = 10/559 (2%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 |||||||| |||||||| |||||||| ||||| | | | | ||||||||| |||| Sbjct 66626 ATTGGTATCGATTTAGGTACTACTTATTCATGTGTTGGTATCTACAAAAATGGTAGAGTA 66567 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| ||| | ||||| || || || | | |||||||| ||||| || |||||||| Sbjct 66566 GAAATCATTCCAAATGAACAGGGCAACCGTATTACACCATCTTATGTATCATTTACTGAT 66507 Query 474452 ACTGA-ACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATAC 474510 ||| | || | || || || | ||||| | |||||| || ||||| ||| | || Sbjct 66506 GATGAGAGAT-TGATCGGTGAGTCAGCTAAGAACCAAGCTACAATCAATCCAGTTCAGAC 66448 Query 474511 TATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGA 474570 | || |||| |||||| | || || ||| |||| | ||| | | |||||| || Sbjct 66447 ATTGTTCGATGTGAAAAGACTTATCGGCCGTCGTTTTAAGGATGACTCCGTCCAAAAGGA 66388 Query 474571 TATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAAT 474630 || | | | || | | || | | || | | || || || ||| | | | Sbjct 66387 TAAGACTTTGTTACCATATGAGATTGTCAACAAGGACAGCAAGCCTTACATACAGGT--T 66330 Query 474631 ACACGCA--GGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCC 474688 || || ||||| | |||||||| | || ||| | ||||| | |||||||||| Sbjct 66329 ACTGTCAAGGGTGAGAAGAAACAATTGGCTCCAGAAGAGGTTTCTGCTATGGTTTTAGTT 66270 Query 474689 AAAATGAAACAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTA 474746 |||||||| | | || |||| ||||| ||| | ||||| | | || ||||||| Sbjct 66269 AAAATGAAGGAGATTGCTGAAGCT--TATCTCGGAAAGGAAGTCAAGCACGCTGTAATTA 66212 Query 474747 CTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTG 474806 |||||||||| || ||||||||| |||| |||||||| ||||| ||||| || |||| Sbjct 66211 CTGTTCCAGCTTACTTTAATGATGCTCAGCGTCAAGCCACTAAGGATGCTGGTGCTATTG 66152 Query 474807 CAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTC 474866 | ||| | ||||| | ||||| |||||||| |||||||| || || |||||| |||| Sbjct 66151 CTGGTTTGAATGTAATCCGTATCATTAATGAGCCAACAGCGGCAGCTATTGCTTTTGGTT 66092 Query 474867 TTGATAAGAATTCTGACAA 474885 | |||||||| |||| || Sbjct 66091 TGGATAAGAAGGCTGAGAA 66073 Score = 136 bits (150), Expect = 3e-26 Identities = 251/366 (69%), Gaps = 9/366 (2%) Strand=Plus/Minus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 || ||||| ||||| ||||| ||||| |||||||| ||||| | ||| ||| ||||| | Sbjct 65561 AACCCTGACGAAGCCGTTGCTTATGGTGCTGCTGTACAAGCTGGTATCTTAGCAGGTGAG 65502 Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 | || ||| || |||||| | || || || || | | || ||| || Sbjct 65501 GGTGGT-AGCGACT---TATTATTGT-----TGGATGTTACACCTTTAACTTTGGGTATT 65451 Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972 || || ||||| || ||||||| || || |||| ||||| ||| | | ||| || Sbjct 65450 GAGACTGTTGGTGGAGTTATGACCAAGCTCATTGGTAGAAACACTGTTGTTCCAACAAAG 65391 Query 475973 AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTT 476032 || |||| ||| ||||| |||||||| || | ||| |||||| | | | Sbjct 65390 AAGAGCCAAGTTTTTAGTACTTACCAGGATAATCAGCCAGCCGTACTTATCCAAGTTTAT 65331 Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 |||||||| | | | || || || || ||| || |||| || | ||| || Sbjct 65330 GAAGGTGAGCGTCCAATGACCAAGGACAACAACCTCCTCGGAAAGTTCGAGCTTTCTGGA 65271 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 || || |||||||| ||||| |||||||||||||| ||||||||||| |||||| | || Sbjct 65270 ATCCCCCCTGCTCCAAGAGGTGTTCCTCAAATTGAGGTTACTTTTGAAATTGATACTGAT 65211 Query 476153 GGTATT 476158 |||||| Sbjct 65210 GGTATT 65205 >seq224 Length=184738 Score = 129 bits (142), Expect = 4e-24 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 ||||| ||||| ||||| |||||||| ||||||||| | ||||| |||||||||||||| Sbjct 73618 GATTTCTCATCACCAAACATTGCAAAAGAAATGCATGTGGGACATTTGAGATCTACAATC 73677 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAAAT 817219 |||||||| | |||||||| ||| | | |||| ||| ||| |||| | ||| Sbjct 73678 ATTGGTGACACGACATGTAGAATTCTTGAGTACTTAGGATTTGAGGTATTAAGAGTTAAT 73737 Query 817220 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCATA 817263 ||| |||| |||||||| || ||||| |||||| | || | ||| Sbjct 73738 CATGTTGGAGATTGGGGTACTCAATTCGGTATGCTTATCGAATA 73781 >seq849 Length=33325 Score = 125 bits (138), Expect = 5e-23 Identities = 136/178 (76%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||| ||||||| ||||||||| ||| || ||||||||||| || || || | |||||| Sbjct 19444 ATTGTAATCAGATAGAGTTCTTCCATCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTG 19503 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||| || || ||||||||||||||||||||||||||| ||| ||| ||||| ||||| Sbjct 19504 TTGGTCGGGTGGAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCAATTGTATC 19563 Query 480713 AG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || ||| || ||||| || || || | ||| ||||| ||||| || Sbjct 19564 TGAAGGCTCTACTTCCAA-TGTGATAGTCTTTCCTGTCAAAGTTTTAACAAAAATCTG 19620 Score = 116 bits (128), Expect = 2e-20 Identities = 134/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||| ||||||| |||||||| || || | ||| || || ||||| || | |||||| Sbjct 19672 ATTGTAATCAGAGAGAGTTCTTCCGTCCTCTAATTGTTTCCCCGCAAAGATCAAACGTTG 19731 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||||||| |||||||||||||| |||||||||||| ||| ||| ||||| ||||| Sbjct 19732 TTGATCAGGTGGAATTCCTTCCTTATCTTGAATCTTTGCTTTAACATTCTCAATTGTATC 19791 Query 480713 AG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || ||| || ||||| || || || | ||||||||| ||||| || Sbjct 19792 TGAAGGCTCTACTTCCAA-TGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTG 19848 Score = 107 bits (118), Expect = 1e-17 Identities = 132/178 (74%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||| ||||||| |||||||| || || | ||| ||||| ||||| || | |||||| Sbjct 19216 ATTGTAATCAGAGAGAGTTCTTCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTG 19275 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||| || || ||||||||||||||||||||||||||| ||| ||| || || ||||| Sbjct 19276 TTGGTCGGGTGGAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCGATTGTATC 19335 Query 480713 AG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || ||| || ||||| || || || | ||| ||||| ||||| || Sbjct 19336 TGAAGGCTCTACTTCCAA-TGTTATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTG 19392 >seq335 Length=109725 Score = 114 bits (126), Expect = 8e-20 Identities = 202/287 (70%), Gaps = 18/287 (6%) Strand=Plus/Minus Query 355249 CCAGTGCCAATACCTTCTGTTCCATTAACTAAAATCATTGGAATTACAGGTACATAAAAT 355308 || || |||||||| || || ||||| || |||||||||||||||| || || ||| || Sbjct 4519 CCTGTTCCAATACCGTCAGTACCATTCACCAAAATCATTGGAATTATTGGAACGTAATAT 4460 Query 355309 ACTGGTTCAATCATTTTATTATCTTCAAATTGAT--GTTGCAATACATCAAAATCATGTT 355366 | || ||||| || ||| ||| || | ||| |||| | | |||| || Sbjct 4459 AAAGGCTCAATTTGTTGTCCATCATCATATAAGTAAGTT--AATAAAGGATCATCAGCTT 4402 Query 355367 GTATGAAAATATATTTAGTTAATTGATTGA--GTTGTGTGAAGATATATCGTGCA---CT 355421 | ||| |||||| |||| ||| |||| | | || || ||||| || ||| || Sbjct 4401 CTGGGAATATATATCTAGTCCATT--TTGATAGCTTAGTAAATATATAACGAGCAGCGCT 4344 Query 355422 TGCATTATCTTTGCCTCCA--CTTAATCTTGTACCAAATTGACCATTGGGAAGTAATAAA 355479 ||||| |||| || || ||| ||| |||||||||||||| || ||||||| Sbjct 4343 TGCAT---CTTTTCCGCCCTCCTT--TCTACTACCAAATTGACCACAAGGTTCTAATAAA 4289 Query 355480 TTTATGTTGTTACTTCCAACATAATTTTGTGCCATTTTTATTATAGT 355526 || | ||||||||||||||| ||||||| ||||| |||| ||||| Sbjct 4288 TTAAGATTGTTACTTCCAACAAAATTTTGAGCCATGTTTACAATAGT 4242 >seq445 Length=134117 Score = 104 bits (114), Expect = 2e-16 Identities = 133/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 480590 AACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACG 480649 || ||| || |||| || ||||||| |||||| | ||||||||| ||||| || ||||| Sbjct 79402 AATATTGTAGTCAGATAAAGTTCTGCCATCTTCCAATTGCTTTCCTGCAAAGATCAGACG 79343 Query 480650 TTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGT 480709 ||||||||||| ||||| || || ||||| || |||||| || ||| ||||| || Sbjct 79342 CTGTTGATCAGGTGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTAACATTCTCAATGGT 79283 Query 480710 ATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTT 480768 || | | | || || ||| || || || || || || | ||| || || ||||||| Sbjct 79282 GTCGGAAGGCTCAACTTCCAA-TGTGATGGTCTTTCCTGTTAAAGTTTTTACAAAAATTT 79224 Query 480769 G 480769 | Sbjct 79223 G 79223 >seq290 Length=478353 Score = 100 bits (110), Expect = 2e-15 Identities = 267/403 (66%), Gaps = 24/403 (6%) Strand=Plus/Plus Query 894947 TAATTTATATTGCTGATTTATTTGCAAAAATGAATaaaaaaaTGGATTCTGATCTTGATA 895006 || |||| | || |||| ||||| | |||| || || |||| | ||||||||| | Sbjct 16923 TATTTTACGTAGCAGATTGGTTTGCTCTACTGAACAATAAGATGGGTGGTGATCTTGAAA 16982 Query 895007 AAATAAAAGAT-GTAGGTTTATATTTCATTGAAGTTTTTAAAGCATGTGGTATTAATATG 895065 | || || ||| || ||| |||||| || | | | ||||| || || ||||| Sbjct 16983 AGATCAA-GATCGTTGGTGAATATTTTGTTCACATATGGAAAGCTGCAGGAATGGATATG 17041 Query 895066 TCTGAAACAAAGTTTATTTGGTCAAGTGATTTATTTAA---TAAAAATCCTGAAAAATAT 895122 || | || ||| ||||| || ||||| |||| | || || | | ||||| Sbjct 17042 ACTAATGTAAGATTTGTTTGGGCATCGGATTTCATTAACGGTGAAGATTCCAATGAATAT 17101 Query 895123 TTTACAAGATTGTTAGATATTTCCGAAGAAACCTC--TCTTTCCAGGAGTAAAAGATGTT 895180 | |||| | || |||||||| ||||| | | || | || | ||||||||||| Sbjct 17102 TGGTTAAGAGTATTTGATATTTCT--AGAAAGTTTAATATTACTAGAATTAAAAGATGTT 17159 Query 895181 GTCAAATTATGGGTCGAAAAGACGGAGATGA---ATTATCTGTTTCTCAAATTATTTATC 895237 | ||||||||||| || |||| | ||||| | || || ||| | | |||||| Sbjct 17160 GCCAAATTATGGGGAGACAAGAAAGTGATGAGCAACCATGTGCTTC---AGTCTTTTATC 17216 Query 895238 CTTGCATGCAAGTTGCAGATATTTTTGAACTCGAACCTGAAGGAATAGATATTTGTCAAT 895297 | || ||||| |||||||| || |||| || | |||||||||||||| Sbjct 17217 CATGTATGCAGTGCGCAGATATATTCCAACTGAAAGC---------AGATATTTGTCAAT 17267 Query 895298 TAGGTGTTGATCAACGTAAAGTTAATATGCTCGCTCTCGAATA 895340 ||||| | || || | ||||| |||||||| ||| ||||| Sbjct 17268 TAGGTATGGACCAGAGAAAAGTAAATATGCTTGCTAGAGAATA 17310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268142610691244