Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq290 132 2e-26
>seq290
Length=478353
Score = 132 bits (146), Expect = 2e-26
Identities = 294/441 (67%), Gaps = 0/441 (0%)
Strand=Plus/Plus
Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981
||||| |||||||||||| ||| |||| ||| | ||| ||| | || | ||||
Sbjct 254279 TCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGACATCTC 254338
Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041
|| ||||| |||||||| || ||| | | || | || || | || || | ||||||
Sbjct 254339 ATCTCTTCCTTTCCGTGGTTTTTTCTAATTTCAATAAACTCTACAACGTCCAAATGCCAT 254398
Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101
||||| ||||| || |||| | |||||| | ||| || || |||||||| | || ||
Sbjct 254399 GGTTCCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCGCCTTGATCAATATACCTA 254458
Query 26102 GCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTA 26161
||||| ||||| |||| || |||||||| || |||| | || || || || |
Sbjct 254459 GCAGTATCATTATAAACGCGCAGCATTGGAATTAGTCCATTAGACTTCCCATTGGTTCCT 254518
Query 26162 TGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCAT 26221
|||| | || || || |||||||| | | || | ||||| ||
Sbjct 254519 CGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGACCACCTGCAGTC 254578
Query 26222 TTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTC 26281
|| |||| |||||| | | | || || ||||| || ||||| || ||
Sbjct 254579 TTGCTAATATTTGCACATTTAGTTAGCGTGTCAAAAATACCGTTTATTGAGTCTTCTGGA 254638
Query 26282 ATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTC 26341
|||| | ||||| ||||| || | ||| | | | |||||||||||| || | |||
Sbjct 254639 ATTCTGAGCAAAAAGCAAGATGACATTTGTGGTCGTGGTGTTCCTGAATTGAAAAGTGTA 254698
Query 26342 GGTGTAGCATGAGTATAATAT 26362
||||||||||| ||| |||||
Sbjct 254699 GGTGTAGCATGTGTAAAATAT 254719
Score = 91.5 bits (100), Expect = 7e-14
Identities = 321/497 (65%), Gaps = 16/497 (3%)
Strand=Plus/Plus
Query 24691 TTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCAT 24750
|| |||||| | |||||| || || ||||| || || |||||||| |||||||||||
Sbjct 253075 TTGAGTTCTCAAATAATAAATGCCGGTTTTTAAACCTTTTTTCCAACCATAAAAATGCAT 253134
Query 24751 TGATGTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCA 24810
|||| || ||||||| ||| || ||| | | | |||| || |||| ||||||
Sbjct 253135 CGATGATAACTTTGCAAAGTTGGCATTTTCCATATGAATATTCAAAGACTGAGATTGGCA 253194
Query 24811 AACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGC 24870
|||| | | ||||||||||| | ||||| | ||| || | || || || |
Sbjct 253195 AACATATGGACCCCTATCTGCAGCCATATCAATCACCGTCTTTTGCTTAATTTCCCAAAC 253254
Query 24871 TGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATT 24930
|| || || ||| ||| || |||||| | | || ||||||| ||||||
Sbjct 253255 AGTCTTATAAAGCTCACGTATATCTTCTGGAATTGTAGGTATGTTTTGAATACTTCCATT 253314
Query 24931 TTCTCTCAATAGAT-----TCAATCTCATATTCGGTGTCCAAAGATTAATTTTTTCAAGA 24985
| | | || || | || | || || ||| | || || | | |
Sbjct 253315 ATTTGCAATTATATTTTGCTTAAGCCTATCATC-----CCATAATCCAAGTTCTAACAAA 253369
Query 24986 TCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGAT 25045
|| | | || ||| || | | || ||||| ||||| | || || | ||||
Sbjct 253370 TCATTTAGTAAATGTGGGTTCACTACAAAGAATTCACCAGATAGCACCCTAC--GATGAT 253427
Query 25046 AA--GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATG 25103
|| |||||||| || || ||||||| ||||| || ||||| || || |||||||| |
Sbjct 253428 AAATATTTGAAGTAAAGGGCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAGAGG 253487
Query 25104 CTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTA-ACAATCTCTTGT 25162
| || |||||| | |||||| || ||||| | | ||||| ||| | | ||| || |
Sbjct 253488 CAGTAGGCATTGGAGATATTAAGAGAGAATTACGAATCCCATACTTAGAGATTCT-TTCT 253546
Query 25163 TTTAATTTATCCCAATC 25179
|| | | |||||| ||
Sbjct 253547 TTAAGTGAATCCCAGTC 253563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253037369411975
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |