Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq290 132 2e-26 >seq290 Length=478353 Score = 132 bits (146), Expect = 2e-26 Identities = 294/441 (67%), Gaps = 0/441 (0%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 ||||| |||||||||||| ||| |||| ||| | ||| ||| | || | |||| Sbjct 254279 TCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGACATCTC 254338 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041 || ||||| |||||||| || ||| | | || | || || | || || | |||||| Sbjct 254339 ATCTCTTCCTTTCCGTGGTTTTTTCTAATTTCAATAAACTCTACAACGTCCAAATGCCAT 254398 Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101 ||||| ||||| || |||| | |||||| | ||| || || |||||||| | || || Sbjct 254399 GGTTCCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCGCCTTGATCAATATACCTA 254458 Query 26102 GCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTA 26161 ||||| ||||| |||| || |||||||| || |||| | || || || || | Sbjct 254459 GCAGTATCATTATAAACGCGCAGCATTGGAATTAGTCCATTAGACTTCCCATTGGTTCCT 254518 Query 26162 TGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCAT 26221 |||| | || || || |||||||| | | || | ||||| || Sbjct 254519 CGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGACCACCTGCAGTC 254578 Query 26222 TTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTC 26281 || |||| |||||| | | | || || ||||| || ||||| || || Sbjct 254579 TTGCTAATATTTGCACATTTAGTTAGCGTGTCAAAAATACCGTTTATTGAGTCTTCTGGA 254638 Query 26282 ATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTC 26341 |||| | ||||| ||||| || | ||| | | | |||||||||||| || | ||| Sbjct 254639 ATTCTGAGCAAAAAGCAAGATGACATTTGTGGTCGTGGTGTTCCTGAATTGAAAAGTGTA 254698 Query 26342 GGTGTAGCATGAGTATAATAT 26362 ||||||||||| ||| ||||| Sbjct 254699 GGTGTAGCATGTGTAAAATAT 254719 Score = 91.5 bits (100), Expect = 7e-14 Identities = 321/497 (65%), Gaps = 16/497 (3%) Strand=Plus/Plus Query 24691 TTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCAT 24750 || |||||| | |||||| || || ||||| || || |||||||| ||||||||||| Sbjct 253075 TTGAGTTCTCAAATAATAAATGCCGGTTTTTAAACCTTTTTTCCAACCATAAAAATGCAT 253134 Query 24751 TGATGTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCA 24810 |||| || ||||||| ||| || ||| | | | |||| || |||| |||||| Sbjct 253135 CGATGATAACTTTGCAAAGTTGGCATTTTCCATATGAATATTCAAAGACTGAGATTGGCA 253194 Query 24811 AACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGC 24870 |||| | | ||||||||||| | ||||| | ||| || | || || || | Sbjct 253195 AACATATGGACCCCTATCTGCAGCCATATCAATCACCGTCTTTTGCTTAATTTCCCAAAC 253254 Query 24871 TGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATT 24930 || || || ||| ||| || |||||| | | || ||||||| |||||| Sbjct 253255 AGTCTTATAAAGCTCACGTATATCTTCTGGAATTGTAGGTATGTTTTGAATACTTCCATT 253314 Query 24931 TTCTCTCAATAGAT-----TCAATCTCATATTCGGTGTCCAAAGATTAATTTTTTCAAGA 24985 | | | || || | || | || || ||| | || || | | | Sbjct 253315 ATTTGCAATTATATTTTGCTTAAGCCTATCATC-----CCATAATCCAAGTTCTAACAAA 253369 Query 24986 TCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGAT 25045 || | | || ||| || | | || ||||| ||||| | || || | |||| Sbjct 253370 TCATTTAGTAAATGTGGGTTCACTACAAAGAATTCACCAGATAGCACCCTAC--GATGAT 253427 Query 25046 AA--GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATG 25103 || |||||||| || || ||||||| ||||| || ||||| || || |||||||| | Sbjct 253428 AAATATTTGAAGTAAAGGGCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAGAGG 253487 Query 25104 CTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTA-ACAATCTCTTGT 25162 | || |||||| | |||||| || ||||| | | ||||| ||| | | ||| || | Sbjct 253488 CAGTAGGCATTGGAGATATTAAGAGAGAATTACGAATCCCATACTTAGAGATTCT-TTCT 253546 Query 25163 TTTAATTTATCCCAATC 25179 || | | |||||| || Sbjct 253547 TTAAGTGAATCCCAGTC 253563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253037369411975