Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq290 138 1e-27 >seq290 Length=478353 Score = 138 bits (152), Expect = 1e-27 Identities = 855/1350 (63%), Gaps = 32/1350 (2%) Strand=Plus/Minus Query 75257 GACATTGATTCTG-TCTTGGAGACATACGACAAGATGTCCCAAGG-TATGTTCATTCACG 75314 || ||||| ||| ||||| |||||||||| ||||| ||| ||| || | || | Sbjct 254763 GATATTGAAGCTGCTCTTG-AGACATACGAGTTAATGTCGCAAAAATATTTT-ACACATG 254706 Query 75315 CAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTA 75374 | ||||| || || |||||| | || |||||| |||| || ||||| |||||| | Sbjct 254705 CTACACCTACACTTTTCAATTCAGGAACACCACGACCACAAATGTCATCTTGCTTTTTGC 254646 Query 75375 TCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAA 75434 || | || |||||||| |||||||| | || || || || | ||||| ||| Sbjct 254645 TCAGAATTCCAGAAGACTCAATAAACGGTATTTTTGACACGCTAACTAAATGTGC--AAA 254588 Query 75435 TCTCA--AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATC 75492 | | | ||| || || ||| ||||| || | | || | |||| | | || Sbjct 254587 TATTAGCAAGACTGCAGGTGGTCTTGGGGTGGCAGTAAGTAATATTAGAGGAACTGGTTC 254528 Query 75493 TCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAA 75552 |||||| || || ||||| | || |||| | ||||||||||| ||||| | ||| Sbjct 254527 ATATATTCGAGGAACCAATGGGAAGTCTAATGGACTAATTCCAATGCTGCGCGTTTATAA 254468 Query 75553 CGCCACAGCGCGCTATGTAAATCAAG-CGGGGCGT--CGCAAGGGGTCCATCGCGGTCTA 75609 | || || | ||| | |||||| ||| | | || || || | || || | || Sbjct 254467 TGATACTGCTAGGTATATTGATCAAGGCGGTGGGAAACGTAAAGGTGCTATTGCAATTTA 254408 Query 75610 CTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGA 75669 ||||||||||||||| || | | ||||| |||| | || ||||| || | Sbjct 254407 TTTGGAACCATGGCATTTGGACGTTGTAGAGTTTATTGAAATTAGAAAAAACCACGGAAA 254348 Query 75670 CGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAA 75729 |||||| | ||| | || |||||| | |||| ||| |||| || || || ||| | Sbjct 254347 GGAAGAGATGAGATGTCGTGACCTCTTTCCTGCCCTTTGGGTTCCTGATCTATTTATGGA 254288 Query 75730 GCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAG-GCACCAGGTCTCT 75788 | ||||||| ||| | | ||| | | | || || ||| || ||| ||| | Sbjct 254287 GAGGGTTGAAAAGGATCAAGATTGGACCTTGATGTGCCCGGACGAGTGCA-GAGGATTGC 254229 Query 75789 CCGACGCGGTGGGTGAGGAGTTT--GAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAG 75846 || | |||||| |||||| ||| | ||| | | || ||| | | || | Sbjct 254228 AGGATGTTTGGGGTGATGAGTTTAGGAA--ATTGTACGAAGAATACGAAAAACAAGGGCG 254171 Query 75847 AGCCAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGA 75906 | | ||| | ||| | ||||| || | | | || | || Sbjct 254170 TGGGAGAAAGACCATGAAAGCGCAAAAACTTTGGTTTTTAATATTGCAGGCTCAAATTGA 254111 Query 75907 GACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAA 75966 || ||||| |||| ||| ||| ||||||||| || | ||| |||||||||||||| Sbjct 254110 AACGGGAACGCCATTTATTTGTTATAAGGATGCTGCAAATAGGAAAAGTAACCAAAAGAA 254051 Query 75967 TTTGGGAACAATCAAGAGCTCAA--ATCTT-TGCACGGAAATTTTAGAGTACACAGATAA 76023 ||||||||| || ||||| | ||| ||||| ||||| | || ||||| | Sbjct 254050 TTTGGGAACTAT---TGTCTCAAGTAACTTATGCACAGAAATAATGGAATACACTAGTGG 253994 Query 76024 GGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGA 76083 ||||| | || ||||| ||| ||||||| |||| | || |||| || || |||| Sbjct 253993 AGATGAAATTGCAGTTTGTAATCTGGCATCTATCGGGTTACCGAAGTTCGTTGATAAAGA 253934 Query 76084 GACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCT 76143 | || ||| ||| ||| || | | ||| | || ||| | |||| | ||| | Sbjct 253933 TAACAAAACATTTAATTTTGACAAGTTAAAGGAAGTTACGAAGGTGATTACGAGGAATTT 253874 Query 76144 AAACCGAGTCATTGACAGAAATTTTTA-TCCCGTTGAGACTGCGCGAAAGTCTAATATGC 76202 ||| ||| ||||| | || |||| ||| || ||| || ||| | Sbjct 253873 AAATAAAGTAGTTGACTTTGGGTACTATTCCCTCCCAGAATG-TAAAAATTCAAATCTAA 253815 Query 76203 GACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCT 76262 |||| | || | || | || || ||||| |||||||| ||||| || || | Sbjct 253814 GACATCGTCCGTTGGGAATCGGCGTCCAAGGGCTCGCGGACTGCTTTATGATGCTTCG-T 253756 Query 76263 ACG-CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTAT 76321 | | | | ||| |||||| |||| || || ||||| || |||||| |||||| Sbjct 253755 ATGCCGTATGACTCAGATAAAGCTAAAAAGCTGAATAAAGAAATTTTTGAAGTTATGTAT 253696 Query 76322 CACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTT 76381 ||||| | || ||||| || ||||| | || ||| | || | || ||| ||| | Sbjct 253695 TACGCAGCTCTTGAGGCTAGCTGTGAGCTTGCAGAAAAAGATGGGCCATACGAGTCATAT 253636 Query 76382 GAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAG 76441 || || || ||| |||| | | || ||||||||||||| | || | |||| Sbjct 253635 TCTGGATCACCTGCGAGTAAAGGTATCTTGCAATTTGATATGTGGGGA-GTTACACCAGA 253577 Query 76442 CTC----AACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAA 76497 || | ||||||||| || || ||| | ||| || | || ||||||| Sbjct 253576 TTCTGGGCTTTGTGACTGGGATTCACTTAAAGAAAGAATCTCTAAGTATGGGATTCGTAA 253517 Query 76498 CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 76557 ||| || || | |||||||| || ||||| || |||| || || ||||| ||||| Sbjct 253516 TTCTCTCTTAATATCTCCAATGCCTACTGCCTCTACTTCACAGATTTTAGGTAACAATGA 253457 Query 76558 ATGCTTTGAACCATACACAACAAACATCTA 76587 | ||||| || | || |||| || || Sbjct 253456 GAGTTTTGAGCCCTTTACTTCAAATATTTA 253427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596563239076640