Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq223 215 8e-51 seq445 109 8e-19 >seq223 Length=111419 Score = 215 bits (238), Expect = 8e-51 Identities = 576/863 (67%), Gaps = 24/863 (3%) Strand=Plus/Plus Query 17865 TTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAAT 17924 ||| ||||||||| ||| | || |||||||||||||| || |||| | ||| || | | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 17925 TCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTAT-TAATTCGTATAAT 17983 ||| ||||||| ||||| ||| |||| ||||||| || ||| | | | | Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTAT-ATATTTTGGGGACATCTAAAGCAAAAAGT 58973 Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATC-GCAATTCATACCTAGTAG 18042 | |||||| ||||||||||| | |||||| | ||| || || | |||||||||| | || Sbjct 58974 AGTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTGGAATTCATACCAATAAG 59032 Query 18043 TCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTAT 18102 | ||| |||| |||| || || | | | || | ||||||| ||| || || Sbjct 59033 ATCAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGAT 59092 Query 18103 GTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGC 18162 | | ||| ||||| |||| | |||| | ||| | | | | ||| | ||| || || Sbjct 59093 TTGTTGTACTCTAGAAGTTGGTAGTTTA-AATTTAAGGGCT--TTATAGATTAAGCAAGC 59149 Query 18163 AAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGG 18222 |||||||| |||| |||||||| | | || | |||||| ||| || | || || Sbjct 59150 AAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGG 59209 Query 18223 CATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACC 18282 ||| | || | |||||| |||||||| || | || |||| |||||| || || || Sbjct 59210 CATAAGTCCACGTTTTTTAAGCCAAAAAATAGCACAAAAGCTACCAGAAAATAAGATTCC 59269 Query 18283 CTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT--AT 18339 ||||| |||| ||| | || | ||| ||||||||| || ||| | || | || Sbjct 59270 TTCAACTGCAC-AGAATCCAATAATTCTCTCAGCAAAA---GATCTAT--CACAATTCAT 59323 Query 18340 CCATTTTTGTGCCCATTCT-CCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAA 18398 |||||| |||||| ||| |||| | | | ||| || || | || Sbjct 59324 CCATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGC-TGAAATATGAGAGATTGCTTCAA 59382 Query 18399 ACAAATCATCT--TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456 ||| ||| | |||||| || | ||||| | || || | || ||||| | Sbjct 59383 --AAAGCATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGAATATGT 59440 Query 18457 TTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATA 18516 ||| |||||| ||| ||||| || |||||| |||| || |||||| || || Sbjct 59441 CTCATTATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCTTCTGGTAT 59500 Query 18517 TTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGC 18576 ||| || || ||| ||| || | |||| || || |||| ||||| ||| | || Sbjct 59501 TTGTATTTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGC 59560 Query 18577 GAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTC 18636 ||||| || | ||||||||| || || ||| ||||| ||| || ||| | | ||| || Sbjct 59561 AAAAAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCCCAATC 59620 Query 18637 ATCT-ATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTT 18695 ||| ||||| || ||||| |||||| | |||||| |||| ||| || | || Sbjct 59621 -TCTGGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTT 59679 Query 18696 TGTACATTTTATAAATATCTTCA 18718 | |||||| ||||||||||| Sbjct 59680 TATACATTGACCAAATATCTTCA 59702 >seq445 Length=134117 Score = 109 bits (120), Expect = 8e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| ||| | ||||| || || ||||| || || ||||| ||||| || | Sbjct 79217 AAGATGCAAATTTTTGTAAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAGCCT 79276 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| || || || || || || || ||||| ||||| || || || Sbjct 79277 TCCGACACCATTGAGAATGTTAAGGCAAAGATCCAGGACAAAGAGGGCATTCCACCTGAT 79336 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||| | |||| | ||| || ||||| | |||||| |||||||||||| || || Sbjct 79337 CAACAGCGTCTGATCTTTGCAGGAAAGCAATTGGAAGATGGCAGAACTTTATCTGACTAC 79396 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGT 156052 ||||| || ||| | || | ||||| ||| | ||| | ||||| ||||| Sbjct 79397 AATATTCAGAAGGAGTCTACCTTACATTTGGTGCTGAGACTTAGAGGTGGTGT 79449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731864196414800