Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq849 159 7e-34 seq223 140 6e-28 seq445 134 3e-26 >seq849 Length=33325 Score = 159 bits (176), Expect = 7e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || | ||||| ||||||||||| | || || |||||| |||||| Sbjct 19622 ATACCACCTCTGAGTCTCAATACCAAATGTAAAGTGGATTCCTTTTGGATATTGTAATCA 19681 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | | || || |||||||| || |||||||| || | |||||||||||| Sbjct 19682 GAGAGAGTTCTTCCGTCCTCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGGT 19741 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| || || ||| ||||| || | |||||| | ||| Sbjct 19742 GGAATTCCTTCCTTATCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCT 19801 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | || || || || || || || || |||| ||| |||||||| || Sbjct 19802 ACTTCCAATGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 19854 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||||||| | ||||| ||||||||||| | ||||| |||||| |||||| Sbjct 19166 ATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCA 19225 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | | || || |||||||| || |||||||| || | ||||| || ||| Sbjct 19226 GAGAGAGTTCTTCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGT 19285 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| || || ||| ||||| || | |||||| | ||| Sbjct 19286 GGAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCT 19345 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || || || || || || || ||||||| ||| |||||||| Sbjct 19346 ACTTCCAATGTTATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || | || ||||| |||||||| | || || |||||| |||||| Sbjct 19394 ATACCACCTCTGAGCCTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCA 19453 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| |||| | |||| || | ||| || || || ||||| || | ||||| || ||| Sbjct 19454 GATAGAGTTCTTCCATCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGT 19513 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| || || ||| ||||| || | |||||| | ||| Sbjct 19514 GGAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCT 19573 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || || || || || || || ||||||| ||| |||||||| Sbjct 19574 ACTTCCAATGTGATAGTCTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623 >seq223 Length=111419 Score = 140 bits (154), Expect = 6e-28 Identities = 507/783 (65%), Gaps = 26/783 (3%) Strand=Plus/Plus Query 49597 AATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATAATAATCTA 49655 ||||||| ||||| || |||||| |||||| ||| | | || | | || |||| Sbjct 58921 AATCAAAAGGATTGGTGACATTATA-TATTTTGGGGACATCTAAAGCAAAAAGTAGTCTA 58979 Query 49656 TCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTTAAAT 49715 || ||||||||||||| |||||| | ||| | | |||||||||| ||||| | || Sbjct 58980 TCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACC-AATAAGATCAAC 59038 Query 49716 GGTAAT-GCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataat 49774 | || | |||| || || | | |||| | || ||||||| | || || | | Sbjct 59039 AGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGAT--TTGT 59096 Query 49775 tatattatttt--ttgataatttatatttaatatgattcgcatatattaaACATGCAAAA 49832 | || | | ||| || |||| |||||| || ||| ||||| || |||||| Sbjct 59097 TGTACTCTAGAAGTTGGTAGTTTAAATTTAAGGGCTTT---ATAGATTAAGCAAGCAAAA 59153 Query 49833 TCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATT 49892 |||| ||||| || || || | |||| ||| || ||| || | ||| ||||| Sbjct 59154 TCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGGCATA 59213 Query 49893 AATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCG 49952 | ||| | |||||||||||||| || | ||| |||| |||||| || || || || Sbjct 59214 AGTCCACGTTTTTTAAGCCAAAAAATAGCACAAAAGCTACCAGAAAATAAGATTCCTTCA 59273 Query 49953 ACACACGCA-AATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT-ATCCAAT 50010 || | || ||| | || ||||| | |||| || ||||| | | | ||||| | Sbjct 59274 ACTG-CACAGAATCCAATAATTCTCTCAGCAAAAG---ATCTATCA-CAATTCATCCATT 59328 Query 50011 TTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAATT 50070 | | ||||| ||||| |||||||| | | | |||| || |||| ||| | Sbjct 59329 TAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAAAAG-- 59386 Query 50071 CAttttt--ttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGA 50128 ||||| ||| | || | ||| ||||| | ||| Sbjct 59387 CATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGAATATGTCTCATT 59446 Query 50129 ATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAAC 50188 ||||| ||| ||||| |||||||| | |||| | ||| ||||||| || | Sbjct 59447 ATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCTTCTGGTATTTGTAT 59506 Query 50189 TTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAA 50248 ||| || || | | | || || || |||||||||||| ||| || || || Sbjct 59507 TTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAAAAA 59566 Query 50249 TGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAG 50308 |||| ||| ||||| ||||| ||| ||||| |||||| | | |||||||| | Sbjct 59567 GGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCCCAATCTCTGGA 59626 Query 50309 ATCGTTTGA--TAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTTATAC 50366 ||| |||| |||||| | |||||| | ||||||||||||| | | |||||||||| Sbjct 59627 ATC--TTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATAC 59684 Query 50367 ATT 50369 ||| Sbjct 59685 ATT 59687 >seq445 Length=134117 Score = 134 bits (148), Expect = 3e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||||| |||||||||||| | | || |||||||| |||| ||| || ||||| || Sbjct 79453 AATAACACCACCTCTAAGTCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTA 79394 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 |||||||| |||| |||| |||||||| || || |||||||| | | ||||||||| Sbjct 79393 GTCAGATAAAGTTCTGCCATCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATC 79334 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 |||||| || || ||||| || || || || || ||||| || | || || | Sbjct 79333 AGGTGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGG 79274 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| | || ||||| || || ||||| ||||| | ||| || ||||| || Sbjct 79273 CTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCATCTT 79217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984469240556550