Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq849 154 3e-32 seq445 123 5e-23 seq223 122 2e-22 >seq849 Length=33325 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||||| ||||| ||||||||||| | ||||| ||||| ||||| Sbjct 19166 ATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCA 19225 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | |||| || |||||||| || ||||| || || | |||||||| ||| Sbjct 19226 GAGAGAGTTCTTCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGT 19285 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || || ||| ||||| || |||||||| | ||| Sbjct 19286 GGAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCT 19345 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || || || || || || || ||||||| || |||||||| Sbjct 19346 ACTTCCAATGTTATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395 Score = 150 bits (166), Expect = 3e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| ||||| ||||||||||| | || || ||||| ||||| Sbjct 19622 ATACCACCTCTGAGTCTCAATACCAAATGTAAAGTGGATTCCTTTTGGATATTGTAATCA 19681 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | |||| || |||||||| || ||||| || || | ||||| |||||| Sbjct 19682 GAGAGAGTTCTTCCGTCCTCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGGT 19741 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| || || ||| ||||| || |||||||| | ||| Sbjct 19742 GGAATTCCTTCCTTATCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCT 19801 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| | || || || || || || || || |||| || |||||||| || Sbjct 19802 ACTTCCAATGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 19854 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || | || ||||| |||||||| | || || ||||| ||||| Sbjct 19394 ATACCACCTCTGAGCCTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCA 19453 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| || || | | || || | ||| || || || || || || | |||||||| ||| Sbjct 19454 GATAGAGTTCTTCCATCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGT 19513 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || || ||| ||||| || |||||||| | ||| Sbjct 19514 GGAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCT 19573 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || || || || || || || ||||||| || |||||||| Sbjct 19574 ACTTCCAATGTGATAGTCTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623 >seq445 Length=134117 Score = 123 bits (136), Expect = 5e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 |||| |||||||||||||| | || |||||||| |||| ||| || |||||| || Sbjct 79452 ATAACACCACCTCTAAGTCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAG 79393 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || ||||||| || | || |||||||| || || ||||| || | | |||||| ||| Sbjct 79392 TCAGATAAAGTTCTGCCATCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCA 79333 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || || ||||| || || || || || ||||| || || || || | Sbjct 79332 GGTGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGC 79273 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| | || ||||| || || ||||| ||||| | || || ||||| || Sbjct 79272 TCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCATCTT 79217 >seq223 Length=111419 Score = 122 bits (134), Expect = 2e-22 Identities = 537/848 (63%), Gaps = 24/848 (3%) Strand=Plus/Plus Query 38833 TTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAAT 38892 |||||||||| |||| | |||||||| || |||||||| |||| | ||| || | | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 38893 TCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATAAT 38951 ||| ||||||| ||||| || |||||| |||||| ||| | | || | | | Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATA-TATTTTGGGGACATCTAAAGCAAAAAGT 58973 Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAAT 39011 | |||||| || |||||||||| |||||| ||| | | |||||||||| ||||| Sbjct 58974 AGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACC-AATAAG 59032 Query 39012 TTAAATGGTAAT-GCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 | || | || | |||| || || | | |||| | || ||||||| | || || Sbjct 59033 ATCAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGAT 59092 Query 39071 cataattatattatttt--ttgataatttatatttaatatgattcgcatataGTAAACAT 39128 | || || | | ||| || |||| |||||| || ||| | ||| || Sbjct 59093 --TTGTTGTACTCTAGAAGTTGGTAGTTTAAATTTAAGGGCTTT---ATAGATTAAGCAA 59147 Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188 |||||||| | ||||| ||||| || | |||| ||| || ||| || | ||| Sbjct 59148 GCAAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCA 59207 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248 ||||| | ||| | |||||||||||||| || | ||| |||| |||||| || || Sbjct 59208 GGCATAAGTCCACGTTTTTTAAGCCAAAAAATAGCACAAAAGCTACCAGAAAATAAGATT 59267 Query 39249 CCCTCCACACACGCA-AATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAAT 39307 || || || | || ||| | || ||||| | |||| || ||||| || Sbjct 59268 CCTTCAACTG-CACAGAATCCAATAATTCTCTCAGCAAAAG---ATCTATCACAATTCAT 59323 Query 39308 CCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 ||| || | ||||| ||||| |||||||| | | | |||| || |||| ||| Sbjct 59324 CCATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAA 59383 Query 39368 TAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA--GAATACATT 39425 | ||| | ||||| | Sbjct 59384 AAG--CATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGAATATGTC 59441 Query 39426 TCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATAC 39485 ||| ||||| ||| ||||| |||||||| | |||| | || ||||||| Sbjct 59442 TCATTATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCTTCTGGTATT 59501 Query 39486 TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCG 39545 || | ||| || || | | | || || || |||||||||||| ||| || Sbjct 59502 TGTATTTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCA 59561 Query 39546 AAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGAT 39605 || || |||| ||||||||| ||||| ||| ||||| |||||| | | |||||||| | Sbjct 59562 AAAAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCCCAATCT 59621 Query 39606 TCAAGATCGTTTGA--TAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTT 39663 ||| |||| |||||| | |||||| | |||||| |||||| | | ||||| Sbjct 59622 CTGGAATC--TTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTT 59679 Query 39664 TATACATT 39671 |||||||| Sbjct 59680 TATACATT 59687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905126348987400