Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq849 154 3e-32
seq445 123 5e-23
seq223 122 2e-22
>seq849
Length=33325
Score = 154 bits (170), Expect = 3e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||||||||||| ||||| ||||||||||| | ||||| ||||| |||||
Sbjct 19166 ATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCA 19225
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | || || | |||| || |||||||| || ||||| || || | |||||||| |||
Sbjct 19226 GAGAGAGTTCTTCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGT 19285
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| |||||||| || ||||| || || ||| ||||| || |||||||| | |||
Sbjct 19286 GGAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCT 19345
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| | || || || || || || || ||||||| || ||||||||
Sbjct 19346 ACTTCCAATGTTATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395
Score = 150 bits (166), Expect = 3e-31
Identities = 173/233 (74%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| |||| ||||| ||||||||||| | || || ||||| |||||
Sbjct 19622 ATACCACCTCTGAGTCTCAATACCAAATGTAAAGTGGATTCCTTTTGGATATTGTAATCA 19681
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | || || | |||| || |||||||| || ||||| || || | ||||| ||||||
Sbjct 19682 GAGAGAGTTCTTCCGTCCTCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGGT 19741
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| |||||||| |||||||| || || ||| ||||| || |||||||| | |||
Sbjct 19742 GGAATTCCTTCCTTATCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCT 19801
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
||||| | || || || || || || || || |||| || |||||||| ||
Sbjct 19802 ACTTCCAATGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 19854
Score = 127 bits (140), Expect = 4e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| || | || ||||| |||||||| | || || ||||| |||||
Sbjct 19394 ATACCACCTCTGAGCCTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCA 19453
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|||| || || | | || || | ||| || || || || || || | |||||||| |||
Sbjct 19454 GATAGAGTTCTTCCATCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGT 19513
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| |||||||| || ||||| || || ||| ||||| || |||||||| | |||
Sbjct 19514 GGAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCT 19573
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| | || || || || || || || ||||||| || ||||||||
Sbjct 19574 ACTTCCAATGTGATAGTCTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623
>seq445
Length=134117
Score = 123 bits (136), Expect = 5e-23
Identities = 169/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896
|||| |||||||||||||| | || |||||||| |||| ||| || |||||| ||
Sbjct 79452 ATAACACCACCTCTAAGTCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAG 79393
Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956
|| ||||||| || | || |||||||| || || ||||| || | | |||||| |||
Sbjct 79392 TCAGATAAAGTTCTGCCATCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCA 79333
Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016
||||| || || ||||| || || || || || ||||| || || || || |
Sbjct 79332 GGTGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGC 79273
Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| ||||| | || ||||| || || ||||| ||||| | || || ||||| ||
Sbjct 79272 TCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCATCTT 79217
>seq223
Length=111419
Score = 122 bits (134), Expect = 2e-22
Identities = 537/848 (63%), Gaps = 24/848 (3%)
Strand=Plus/Plus
Query 38833 TTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAAT 38892
|||||||||| |||| | |||||||| || |||||||| |||| | ||| || | |
Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914
Query 38893 TCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATAAT 38951
||| ||||||| ||||| || |||||| |||||| ||| | | || | | |
Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATA-TATTTTGGGGACATCTAAAGCAAAAAGT 58973
Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAAT 39011
| |||||| || |||||||||| |||||| ||| | | |||||||||| |||||
Sbjct 58974 AGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACC-AATAAG 59032
Query 39012 TTAAATGGTAAT-GCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070
| || | || | |||| || || | | |||| | || ||||||| | || ||
Sbjct 59033 ATCAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGAT 59092
Query 39071 cataattatattatttt--ttgataatttatatttaatatgattcgcatataGTAAACAT 39128
| || || | | ||| || |||| |||||| || ||| | ||| ||
Sbjct 59093 --TTGTTGTACTCTAGAAGTTGGTAGTTTAAATTTAAGGGCTTT---ATAGATTAAGCAA 59147
Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188
|||||||| | ||||| ||||| || | |||| ||| || ||| || | |||
Sbjct 59148 GCAAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCA 59207
Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248
||||| | ||| | |||||||||||||| || | ||| |||| |||||| || ||
Sbjct 59208 GGCATAAGTCCACGTTTTTTAAGCCAAAAAATAGCACAAAAGCTACCAGAAAATAAGATT 59267
Query 39249 CCCTCCACACACGCA-AATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAAT 39307
|| || || | || ||| | || ||||| | |||| || ||||| ||
Sbjct 59268 CCTTCAACTG-CACAGAATCCAATAATTCTCTCAGCAAAAG---ATCTATCACAATTCAT 59323
Query 39308 CCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367
||| || | ||||| ||||| |||||||| | | | |||| || |||| |||
Sbjct 59324 CCATTTAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAA 59383
Query 39368 TAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA--GAATACATT 39425
| ||| | ||||| |
Sbjct 59384 AAG--CATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGAATATGTC 59441
Query 39426 TCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATAC 39485
||| ||||| ||| ||||| |||||||| | |||| | || |||||||
Sbjct 59442 TCATTATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCTTCTGGTATT 59501
Query 39486 TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCG 39545
|| | ||| || || | | | || || || |||||||||||| ||| ||
Sbjct 59502 TGTATTTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCA 59561
Query 39546 AAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGAT 39605
|| || |||| ||||||||| ||||| ||| ||||| |||||| | | |||||||| |
Sbjct 59562 AAAAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCCCAATCT 59621
Query 39606 TCAAGATCGTTTGA--TAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTT 39663
||| |||| |||||| | |||||| | |||||| |||||| | | |||||
Sbjct 59622 CTGGAATC--TTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTT 59679
Query 39664 TATACATT 39671
||||||||
Sbjct 59680 TATACATT 59687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905126348987400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |