Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq412 132 1e-25 seq290 125 2e-23 >seq412 Length=132638 Score = 132 bits (146), Expect = 1e-25 Identities = 284/420 (68%), Gaps = 11/420 (3%) Strand=Plus/Minus Query 288848 TCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTG 288907 |||||||||| || || | ||| |||||||| || ||||||| ||| | | || ||| Sbjct 126078 TCCTATCAAATCTTCCTGGACGCGTTAATGCAGGATCTAATACATCAGAACGATTAGTTC 126019 Query 288908 CTGCCAATACAACAATAGATTCGGTTTGCT---TAAATCCATCCATACTTGTTAAAATTT 288964 | || || ||| || | | | | || ||||||||||||| | | ||| | Sbjct 126018 CAGCTAA---AACTATTACTCCATTATTCTCGGTAAATCCATCCATTTCTACAAGAATCT 125962 Query 288965 GATTAAGTGTTTGTTCCCTTTCATCATT---TGAACCTCTTGAATCACC-CGAATCGCTC 289020 ||||||| || ||| || |||||||| |||| | | |||| | | || | Sbjct 125961 GATTAAGAGTACTTTCTCTCTCATCATTAGATGAAGCAGCAAATCCACCTCCCTTTGCAC 125902 Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 ||| || |||||||||||||| || ||||| |||| | || ||||| || ||| Sbjct 125901 GCTTTCTT-CCAACAGCATCAATCTCATCAATAAAAACAATACTTGGAGACAATTTTCTT 125843 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || || |||||| || ||||| | ||| || | |||||| | ||||| | ||| Sbjct 125842 GCCTGTGAAAATAACTCCCTTACTCTACTTGCACCCATTCCAACAAAAATTTCAATAAAG 125783 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 ||| | |||| | || |||| |||||| ||||| || || ||||| | || | Sbjct 125782 TCACTTCCAGATATATAAAAAAATGGTACATTAGCTTCACCAGCAACTGCTTTTGCTAAT 125723 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260 | ||| || || || || |||||||| |||||| | | || || |||| |||||| ||| Sbjct 125722 AATGTTTTGCCAGTACCTGGTGGTCCTACTAATAAAGCACCTTTCGGTATTTTTGCACCA 125663 >seq290 Length=478353 Score = 125 bits (138), Expect = 2e-23 Identities = 237/348 (68%), Gaps = 3/348 (1%) Strand=Plus/Plus Query 156026 TGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCG 156082 ||| |||| ||| || |||| | ||| || | || ||||| ||||| | ||||| Sbjct 254398 TGGTTCCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCGCCTTGATCAATATACCT 254457 Query 156083 AGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142 |||||| | ||| | || | ||||| ||||| | ||||| || | ||||||||||| Sbjct 254458 AGCAGTATCATTATAAACGCGCAGCATTGGAATTAGTCCATTAGACTTCCCATTGGTTCC 254517 Query 156143 GCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCA 156202 ||||||| ||||||| | | || |||| | | |||| |||||||| Sbjct 254518 TCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGACCACCTGCAGT 254577 Query 156203 TTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTC 156262 || ||| | || |||| ||| || | |||||||| | || || || ||| Sbjct 254578 CTTGCTAATATTTGCACATTTAGTTAGCGTGTCAAAAATACCGTTTATTGAGTCTTCTGG 254637 Query 156263 CATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGT 156322 ||| || | | |||| || | ||| |||||||||||||| | ||||| ||||| Sbjct 254638 AATTCTGAGCAAAAAGCAAGATGACATTTGTGGTCGTGGTGTTCCTGAATTGAAAAGTGT 254697 Query 156323 AGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 |||||| ||||| ||||||| || | ||||| | ||||||||||| Sbjct 254698 AGGTGTAGCATGTGTAAAATATTTTTGCGACATTAACTCGTATGTCTC 254745 Score = 96.9 bits (106), Expect = 1e-14 Identities = 275/420 (65%), Gaps = 2/420 (0%) Strand=Plus/Plus Query 154535 CAGATAATAAATACCTGTCTTTAGCCCTGCCCGCCAACCATAGAAATGCATATTTGTTAA 154594 || ||||||||| || || |||| ||| ||||||||| |||||||| || ||| Sbjct 253084 CAAATAATAAATGCCGGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATCGATGATAA 253143 Query 154595 TGATTTAGGCTCTGGGTCTTCCATCCATAAATTCATACTCTGCGATTGGCAAATATATAA 154654 | | | | | |||||| | ||||| | ||| |||||||||| |||| Sbjct 253144 CTTTGCAAAGTTGGCATTTTCCATATGAATATTCAAAGACTGAGATTGGCAAACATATGG 253203 Query 154655 TCCGCGGTCACGAGCCATATCAATTAGTGTCTTCATTTTAATTTCCCATACAATCTTGTA 154714 || | || |||||||||||| | ||||| ||||||||||| ||| |||| || Sbjct 253204 ACCCCTATCTGCAGCCATATCAATCACCGTCTTTTGCTTAATTTCCCAAACAGTCTTATA 253263 Query 154715 TTTCTCTTTAATATGTTCTGGTAGTCCATCAATATATTGAACGCTTCCCTTGTTGGCAAT 154774 ||| |||| |||||| | | | || | ||||| ||||| || || ||||| Sbjct 253264 AAGCTCACGTATATCTTCTGGAATTGTAGGTATGTTTTGAATACTTCCATTATTTGCAAT 253323 Query 154775 AATATTGTTCTTGACGCTTTCATCCCATAGTTTTAGTGCCAGTAGTTCATCGACCAGATA 154834 ||||| | ||| | || |||||||||| | ||| | | | |||| | | || Sbjct 253324 TATATTTTGCTTAAGCCTATCATCCCATAATCCAAGTTCTAACAAATCATTTAGTAAATG 253383 Query 154835 TTTATTAACCATCGTAAATTCACCCGCCAGAGTTTTCCTGCTG-TAAATATTACTTGTAA 154893 | || || | |||||||| | || | | | || |||||||| |||| Sbjct 253384 TGGGTTCACTACAAAGAATTCACCAGATAGCACCCTAC-GATGATAAATATTTGAAGTAA 253442 Query 154894 TTGGCTCAAAGCACTCGTTATTACCTAAAATCTGGCTTGTGCTTGCTGTAGGCATGGGAG 154953 |||||||| | ||| || |||||||||||||| || || |||||||| |||| Sbjct 253443 AGGGCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAGAGGCAGTAGGCATTGGAG 253502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471801514413461