Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq335 93.3 5e-14 >seq335 Length=109725 Score = 93.3 bits (102), Expect = 5e-14 Identities = 244/363 (67%), Gaps = 26/363 (7%) Strand=Plus/Plus Query 165951 TTAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAA- 166009 |||| ||||| |||||| ||| |||||||| ||||| | | ||| | || || ||| Sbjct 4168 TTAAAGTTGCACAATTAGCTGGTTATGTTGCTGAACATAGCGCTTACCACCACGGAGAAT 4227 Query 166010 CAAAATTT--ATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATA 166067 || ||| | || ||||| | || | || ||| |||||||||| | || ||| Sbjct 4228 CATCATTGCAAAGT---ACTATTGTAAACATGGCTCAAAATTTTGTTGGAAGTAACAATC 4284 Query 166068 TAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTC-- 166125 | ||| | |||||| |||||||||||||| ||| || || || |||||| | Sbjct 4285 TTAATTTATTAGAACCTTGTGGTCAATTTGGTAGTAGAAAGGAGGGCGGAAAAGATGCAA 4344 Query 166126 -TGCTGCATCAAGATATATTTATACCAAACCA-CATAAAATATTAAAATATATATTTAGA 166183 ||||| || | ||||| | ||| || | | || || | | | ||||||||| | Sbjct 4345 GCGCTGC-TC--GTTATATATTTACTAAGCTATCAAAATGGACT-AGATATATATTCCCA 4400 Query 166184 GAAGAAGATGACCCTATTTTAAATTA--TA-CTGTTGAGGG---------TGAACCTATT 166231 |||| ||||| ||| | |||| ||| || || ||| || ||| ||| | Sbjct 4401 GAAGCTGATGATCCTTTATTAACTTACTTATATGATGATGGACAACAAATTGAGCCTTTA 4460 Query 166232 CATTTTATTCCAGTAATCCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGA 166291 ||| ||||| |||| ||| | ||||| | |||||| || |||||||||||||| Sbjct 4461 TATTACGTTCCAATAATTCCAATGATTTTGGTGAATGGTACTGACGGTATTGGAACAGGC 4520 Query 166292 TGG 166294 ||| Sbjct 4521 TGG 4523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632482856079640