Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq849 84.2 1e-11 seq445 84.2 1e-11 >seq849 Length=33325 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || || | ||||| ||| | ||| | ||| ||||| || || || || || ||| Sbjct 19397 CCACCTCTGAGCCTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCAGAT 19456 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | |||| || ||||||||||| |||||||||| ||||| ||||| | || Sbjct 19457 AGAGTTCTTCCATCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGTGGA 19516 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | || ||| ||| || || || || | || | ||| | Sbjct 19517 ATTCCTTCCTTGTCTTGAATCTTTGCTTTAAC--ATTCTCAATTGTATCTGAAGGCTCTA 19574 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || || |||||||| || | || || ||||| |||||||| Sbjct 19575 CTTCCAATGTGATAGTCTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623 >seq445 Length=134117 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 ||||| |||| || | ||| |||||||||||| || ||||| |||| | | || Sbjct 79434 CTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGATAAAGTTCTGCCA 79375 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || |||| ||||||||| || |||||||| || || || || | || | ||||| ||| Sbjct 79374 TCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGGAATGCCCTCTTTG 79315 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTA 34940 || | || ||| || || || || || | || | ||| || || | || | Sbjct 79314 TCCTGGATCTTTGCCTTAAC--ATTCTCAATGGTGTCGGAAGGCTCAACTTCCAATGTGA 79257 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||||| || | || |||||||| || ||||| Sbjct 79256 TGGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCAT 79220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325689414118007