Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq849 84.2 1e-11
seq445 84.2 1e-11
>seq849
Length=33325
Score = 84.2 bits (92), Expect = 1e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || || | ||||| ||| | ||| | ||| ||||| || || || || || |||
Sbjct 19397 CCACCTCTGAGCCTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCAGAT 19456
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| | | |||| || ||||||||||| |||||||||| ||||| ||||| | ||
Sbjct 19457 AGAGTTCTTCCATCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGTGGA 19516
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| || |||||||| | || ||| ||| || || || || | || | ||| |
Sbjct 19517 ATTCCTTCCTTGTCTTGAATCTTTGCTTTAAC--ATTCTCAATTGTATCTGAAGGCTCTA 19574
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || | || || |||||||| || | || || ||||| ||||||||
Sbjct 19575 CTTCCAATGTGATAGTCTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623
>seq445
Length=134117
Score = 84.2 bits (92), Expect = 1e-11
Identities = 150/217 (69%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822
||||| |||| || | ||| |||||||||||| || ||||| |||| | | ||
Sbjct 79434 CTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGATAAAGTTCTGCCA 79375
Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882
|| |||| ||||||||| || |||||||| || || || || | || | ||||| |||
Sbjct 79374 TCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGGAATGCCCTCTTTG 79315
Query 34883 TCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTA 34940
|| | || ||| || || || || || | || | ||| || || | || |
Sbjct 79314 TCCTGGATCTTTGCCTTAAC--ATTCTCAATGGTGTCGGAAGGCTCAACTTCCAATGTGA 79257
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||||||| || | || |||||||| || |||||
Sbjct 79256 TGGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCAT 79220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325689414118007
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |