Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq849 123 2e-23 seq445 93.3 3e-14 >seq849 Length=33325 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||||||| | |||||||||||||| || || ||||| | | || | || || Sbjct 19187 ACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCGTCCTCT 19246 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| || ||| | ||||| | ||| || || || ||||| || || |||||||| Sbjct 19247 AATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCTTG- 19305 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| |||| ||| ||| | || | || || ||| | |||||||| | |||||||| || Sbjct 19306 AATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCTACTTCCAATGTTATAGTCTT 19365 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||||||||| |||||||| Sbjct 19366 TCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 |||||||| ||||| || || ||||| | | || | ||| || ||||| || || Sbjct 19427 GTGGATTCCTTTTGGATATTGTAATCAGATAGAGTTCTTCCATCCTCTAGTTGCTTTCCT 19486 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 || | ||||| | ||| || || || ||||| || || |||||||| ||| |||| ||| Sbjct 19487 GCGAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCTTG-AATCTTTGCTTT 19545 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | || || ||| | |||||||| | || ||||| || || || || || Sbjct 19546 AACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTGATAGTCTTTCCTGTCAAAGT 19605 Query 29769 TTTAACAAATATCTGCAT 29786 ||||||||| |||||||| Sbjct 19606 TTTAACAAAAATCTGCAT 19623 >seq445 Length=134117 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 |||||||||||| | || || || || ||||| || || || | | || | ||| Sbjct 79432 CAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGATAAAGTTCTGCCATC 79373 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | ||| || || ||| | |||| | || ||||| || ||||| ||||||||||| Sbjct 79372 TTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGGAATGCCCTCTTTGTC 79313 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | ||| || ||| | || | ||||| ||| | || ||||| | || || || Sbjct 79312 CTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGCTCAACTTCCAATGTGATGGT 79253 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || ||||| ||||| ||||| || ||||| || Sbjct 79252 CTTTCCTGTTAAAGTTTTTACAAAAATTTGCATCTT 79217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385215195285273