Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq335 87.8 2e-12 >seq335 Length=109725 Score = 87.8 bits (96), Expect = 2e-12 Identities = 243/364 (67%), Gaps = 28/364 (8%) Strand=Plus/Plus Query 162999 TTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAA- 163057 |||| ||||| |||||| ||| |||||||| ||||| | | || | ||||| ||| Sbjct 4168 TTAAAGTTGCACAATTAGCTGGTTATGTTGCTGAACATAGCGCTTACCACCACGGAGAAT 4227 Query 163058 CAAAATTT--ATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATA 163115 || ||| | || ||||| | || | || ||| |||||||||| | || ||| Sbjct 4228 CATCATTGCAAAGT---ACTATTGTAAACATGGCTCAAAATTTTGTTGGAAGTAACAATC 4284 Query 163116 TAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTC-- 163173 | ||| | |||||| |||||||||||||| ||| || || || |||||| | Sbjct 4285 TTAATTTATTAGAACCTTGTGGTCAATTTGGTAGTAGAAAGGAGGGCGGAAAAGATGCAA 4344 Query 163174 -TGCGGCATCAAGATATATTTATACCAAACCAAATAAAAT--ATTAAAATATATATTTAG 163230 || || || ||||||||| | || | | ||||| | | | ||||||||| Sbjct 4345 GCGCTGC-TCGTTATATATTTA---CTAAGCTATCAAAATGGACT-AGATATATATTCCC 4399 Query 163231 AGAAGAAGATGACCCTATTTTAAATTA--TA-CTGTTGAGGG---------TGAACCTGT 163278 ||||| ||||| ||| | |||| ||| || || ||| || ||| ||| | Sbjct 4400 AGAAGCTGATGATCCTTTATTAACTTACTTATATGATGATGGACAACAAATTGAGCCTTT 4459 Query 163279 TCATTTTATCCCAGTGATTCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGG 163338 ||| | ||| | |||||| | ||||| | |||||| || |||||||||||||| Sbjct 4460 ATATTACGTTCCAATAATTCCAATGATTTTGGTGAATGGTACTGACGGTATTGGAACAGG 4519 Query 163339 ATGG 163342 ||| Sbjct 4520 CTGG 4523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635170827418840