Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq113 531 4e-145 seq579 183 2e-40 seq335 109 4e-18 seq401 105 5e-17 >seq113 Length=180777 Score = 531 bits (588), Expect = 4e-145 Identities = 1068/1569 (68%), Gaps = 30/1569 (2%) Strand=Plus/Minus Query 281329 AGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAAT 281388 ||| || ||| ||| | ||||| | ||| | || ||||| || || |||||||| Sbjct 161489 AGCATCATTAACCATGCGTTCAATATCATCCTTTGATAATCTACCCTTATCGTTAGTAAT 161430 Query 281389 AGTAATATTCTTGGATTTGTTTGTTGAT-TTATCAGCGGCAGTCACATTAAGAATACCAT 281447 ||||| || || || | | || | |||||| | |||| ||||| | ||||||| Sbjct 161429 GGTAATCTTGCTGCTCTT-TCCGGTGCTCTTATCAACAGCAGAGACATTCAAGATACCAT 161371 Query 281448 TGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCC 281507 ||||||| | |||||| ||||| ||||| || || || || ||| | || |||||||| | Sbjct 161370 TGGCATCAATATCAAAGGTGACCTCAATCTGTGGCACACCCCTCGGTGCTGGTGGGATAC 161311 Query 281508 CTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGA 281567 | || | || ||| |||| || | || || ||||| | || |||||||| Sbjct 161310 CATCAAGATGGAATTTTCCGAGGAGGTGGTTGTCCTTAGTCATAGCTCTCTCACCCTCAT 161251 Query 281568 AAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC-TGGATTTT 281626 | | |||||| || || |||| ||||| | |||||| || || ||| || || | Sbjct 161250 AGACTTGGATTAAGACACCACTTTGGTTATCAGCATAAGTAGTGAAGACTTGTGTCTTCT 161191 Query 281627 TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCT 281686 || | ||| | ||||| || | ||||||| |||||||||| ||||||||| |||||| Sbjct 161190 TTGCTGGGA-TAGTTGTATTACGCTCAATAAGCTTGGTCATAACACCACCAGCAGTTTCT 161132 Query 281687 AAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTT 281746 ||||| || || | |||| ||||| | | | | || |||| || | | Sbjct 161131 AAACCGAGTGATAATGGAGCAACATCCAACAACAAGAGATCCTGAACGG---CAGAGGAT 161075 Query 281747 TGACCAACA---AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGA 281803 || || || | || || ||||||| |||||||||||| |||||||||||||| ||| Sbjct 161074 TGTTCACCATTTAAGATTGCAGCTTGAACAGCAGCACCATAAGCAACAGCTTCATCTGGA 161015 Query 281804 TTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAGTTGTCTTACCTT 281862 |||| | || | | | ||||| ||||| || | |||| || | || | ||| Sbjct 161014 TTAATTGCTTTGCATGGCTCCTTACCGTTGAAGAATTCCTGAATCAAA--GCCTGAACTT 160957 Query 281863 A-GGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTT 281921 |||||||| | || || |||||||| |||| ||||| || | || |||| Sbjct 160956 TTGGAATACGGGTAGAGCCACCAACTAAGACAACATCATGTACAGATCTCTTGTCCATAC 160897 Query 281922 TTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAA 281981 | |||| | |||||| ||||| || | | | || | || | || | ||| | Sbjct 160896 CAGCATCCTTGAGAACTTTCTCAACTGGAGCTAAAGTTGCACGGAAATAATCAGCACAGA 160837 Query 281982 GTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAAT 282041 |||| || ||| |||||||| ||| | || ||||||||| |||||| | | |||| Sbjct 160836 GTTCCTCAAATCTAGCTCTACTAATGGCAACTGAATAATCAATACCTTCGTAAAGCGAAT 160777 Query 282042 CAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTG 282101 | | |||||| |||| || || ||||| |||| | | || ||||| || ||| | Sbjct 160776 CTAATTCAATAGTAGCCTGGGTGGAAGATGATAAAGTTCTCTTTGCACGCTCGCATTGAG 160717 Query 282102 TCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGT---TTTATATTTTCTCT 282158 | |||| ||||| ||| ||| | || | | | || || | | ||| ||||||| Sbjct 160716 TTCTTAATCTTCTTAAAGCTCTAGCATTTGTAGTTAAGTCCATACCTCTATTCTTTCTCT 160657 Query 282159 TGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAG 282218 | ||||||| ||||| || |||||| | |||||||| |||||||| ||||| | || Sbjct 160656 TAAAATCTTGTACACAGAATTCTACAAGTCTGTTATCAAAGTCTTCACCACCCAAGTGAG 160597 Query 282219 TATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACAT 282278 | | || | ||||| | |||| |||| ||||| |||| || || | | |||| Sbjct 160596 TGTCACCAGCAGTAGCCTTAACTTCAAAAATACCATCCTCAATAGTTAATAATGATACAT 160537 Query 282279 CATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTAT 282338 || || |||||||| | ||| || || | ||||| | || | | ||||||| Sbjct 160536 CAAAAGTACCACCACCTAAATCGAAGATCAAAACATTTCTCTCACCGGTTCCTTTTTTAT 160477 Query 282339 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 282398 ||||||| || |||| |||||| |||||||| |||||||| ||||||| ||||| | || Sbjct 160476 CAAGACCGTAAGCAATAGCAGCTGCAGTTGGCTCATTAATGATTCTCATTACATTCAAAC 160417 Query 282399 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 282458 |||||||| || ||||| || || ||||| | |||||| || || || || || || | Sbjct 160416 CAGCAATTGCACCAGCATCCTTTGTTGCTTGACGTTGTGAGTCATTGAAGTAAGCTGGTA 160357 Query 282459 CAGTAATAACGGCATCTGTTACTT---CTTTTCCAATATAAGCGCTT--GCTGTTTGTTT 282513 |||||| || |||| | ||| || | | | ||| |||| | ||| || Sbjct 160356 CAGTAACTACAGCAT-TCTTAATTGGGCGACCCAAGTAT----GCTTCAGAGATTTCCTT 160302 Query 282514 CATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTG 282573 ||| || ||||| ||| | ||||| | || | | ||| ||| ||| Sbjct 160301 CATCTTTTGTAAAACCATAGCAGAAATCTCCTCGGCATGGAATTCCTTCTTCTCACCCAA 160242 Query 282574 ATATGATACTTCAAAATATGGTTT---ATTACCAACATTAATAACTTTAAATGGCCAATA 282630 ||| ||| || ||| || || | | ||| |||||||||||||| | Sbjct 160241 ATAGCTTACACTAATGATTGGCTTGTCCTTTGGACCTCTAACTACTTTAAATGGCCAGTG 160182 Query 282631 TTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATC 282690 ||||||| ||| || ||||||| ||| | |||||||| | ||||| ||||| Sbjct 160181 AGTCATATCACTTTGTACTGCCTGGTCATCAAATTTCCTACCAATAAGACGTTTAGCATC 160122 Query 282691 AAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATG 282750 ||||| ||||| |||||| ||| |||||| || |||||||| ||||| ||| | Sbjct 160121 AAAAACTGTATTCTCTGGATTTCTAGCAACTTGATTCTTTGCTGCATCACCAATGAGACG 160062 Query 282751 TTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAAT 282810 || || |||||||||| ||||||||||| ||||| || |||||||||||||| | | Sbjct 160061 CTCAGTTTCTGTAAATGCTACATATGATGGTGTTGTACGGTTACCTTGATCATTTGGGAC 160002 Query 282811 AATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAAT 282870 ||| || || || ||||| ||||||||| ||||| | || || ||||||||||| Sbjct 160001 AATATCTACCGTATCATTTCTCCATACACCAACACATGAGTATGTGGTACCTAAATCAAT 159942 Query 282871 ACCAATAGC 282879 ||||||||| Sbjct 159941 ACCAATAGC 159933 Score = 105 bits (116), Expect = 5e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 86118 ACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGC 86177 |||||| |||| ||| ||||||||||| |||||||| ||| | | |||| ||||| || Sbjct 160472 ACCGTAAGCAATAGCAGCTGCAGTTGGCTCATTAATGATTCTCATTACATTCAAACCAGC 160413 Query 86178 AATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGT 86237 |||| | ||| ||| |||||||| | |||| |||||| || || ||||||||||| Sbjct 160412 AATTGCACCAGCATCCTTTGTTGCTTGACGTTGTGAGTCATTGAAGTAAGCTGGTACAGT 160353 Query 86238 AATAACTGCTTTATTAATAGG 86258 || || || || ||||| || Sbjct 160352 AACTACAGCATTCTTAATTGG 160332 >seq579 Length=144132 Score = 183 bits (202), Expect = 2e-40 Identities = 1012/1589 (64%), Gaps = 49/1589 (3%) Strand=Plus/Plus Query 281306 TTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAG 281365 || ||| |||| |||||| | || || ||||||| | ||||| | || | || Sbjct 65071 TTGTCTTCTTCAGCAAATTGCTCTGCCTCCTTAATCATACGTTCAATATCTTCCTGTGAA 65130 Query 281366 AATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCG 281425 | ||| || || ||| || || ||||| |||| ||||| || || || Sbjct 65131 AGTCTGCCCTTATCATTTGTGATGGTAATTTTCTCAGATTTACCAGTACCCTTGTCCTTT 65190 Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||| | || | | |||||||| | ||| | ||||| || || ||||||||||| || Sbjct 65191 GCACTGACTTGTAAAATACCATCAGTATCAATTTCAAAAGTAACCTCAATTTGAGGAACA 65250 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 ||||| ||||||| ||||| || | | || |||| || || || || || Sbjct 65251 CCTCTTGGAGCAGGGGGGATTCCAGAAAGCTCGAACTTTCCGAGGAGGTTGTTGTCCTTG 65310 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | | || ||||| || ||| ||||||| || | | |||||||| ||| Sbjct 65311 GTCATTGGACGCTCACCTTCATAAACTTGGATAAGTACGGCTGGCTGATTATCCTGGTAA 65370 Query 281606 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || |||| ||| ||| | || || |||| ||||||||| |||| | ||||| Sbjct 65371 GTACTAAAAACT-TGGCTCTTCTTTGTTGGAACAACAGTGTTTCTACCAATGAGCTTGGT 65429 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||||| |||||| | || || | ||| | || | ||| || ||||| | ||||| Sbjct 65430 CATAACTCCACCAACAGTCTCAATACCCAAAGTTAAAGGTGTAACATCCA-----ACAAT 65484 Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 281784 | | |||| | | || | ||| | | ||| | ||||| | |||||||||||| Sbjct 65485 AAT---AAGTCGCT-ACCACCCTCACCTGCTAAGATACCAGCTTGTACAGCAGCACCATA 65540 Query 281785 TGCAACAGCTTCATCAGGATTAACAGTT--TCATTTAGTTTT-TTACCATTGAAAAAAT- 281840 ||||| ||||| ||||| || | || || |||| | || || | || || | Sbjct 65541 AGCAACGGCTTCGTCAGGGTTGA---TTCCTCTGTTAGGCTCCTTTCCGTCAAAGAACTC 65597 Query 281841 -TTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTC 281898 |||| ||| | || | ||| || ||||||| || ||||| || || || || || Sbjct 65598 CTTGATC-AAG--GCCTGGATCTTGGGGATACGAGTGGAACCTCCGACCAAAACGATCTC 65654 Query 281899 ATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 281958 || |||| || || | | | | ||| ||||| || | || || || | | Sbjct 65655 ATCTACCTCGGACTTCTTAATTCCAGCGTCCTCCAAAACCTTCTTGACTGGCTCGATAGT 65714 Query 281959 AGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATA 282018 ||| |||||||||| | | || || || || ||||| || | ||| | | | Sbjct 65715 CTTTCTGAACAAGTCTGCATTCAACTCATCAAACTTGGCTCTGGTCAAAGTTTCGCTCAA 65774 Query 282019 ATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 282078 || | | || | |||| |||| |||| | || ||| | | || || || || Sbjct 65775 GTCTACGTCCTCCATCAAACCCTCAATCTCAACCTTAACTTGCGGGGCTGAGGAAAGAGC 65834 Query 282079 ACGTTTAGCACGTTCACATGCTGTCCTT-AGTCTTCGTAAGG---CTTTTGCTGATTGAT 282134 | || | || ||| || || || | | |||| |||| |||||| | | ||| Sbjct 65835 TCTCTTTG-AC-TTCTCAACCTCTCTTCGAAGCTTCTGAAGGGCTCTTTTG-TCA--GAT 65889 Query 282135 TCAAATCTGTTTTATAT-TTTCTCTTGAA-ATCTTCAACACACCATGTTACAAGACGATT 282192 | || ||| | | ||| ||||| ||||| | | || | || || | Sbjct 65890 TTAACGTCCTTTCCTGTCTTTGACTTGATGATCTTGATAAAG---TGGTCCATAACTCTC 65946 Query 282193 --ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 ||| |||||||||||||| || | |||| || || || |||| |||| Sbjct 65947 TGATCGAAATCTTCACCTCCTAAATGGGTATCACCACTTGTGGCAACGACTTCAAAAACG 66006 Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 |||| || | | ||| || | ||||||| || |||||||||| ||| | | | Sbjct 66007 CCATTGTCGATGGTCAAGAGGGAAACATCAAAAGTACCACCACCCAAATCGTATACCA-- 66064 Query 282311 ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370 | || | |||| | ||| ||||| | |||| | |||| ||| || || ||||| Sbjct 66065 AAATGCTCTTCTCAGCCTTC----TTATCCAAACCAAAAGCAATAGCTGCCGCTGTTGGC 66120 Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 |||||||| || | | ||||| | ||||||||| || ||||| ||||||||||| Sbjct 66121 TCATTAATGATACGGATTACATTCAAACCAGCAATAGCACCAGCATCCTTAGTGGCTTGA 66180 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCA 282490 | || | ||| ||||| || || ||||||||||| || || | | ||||| ||||| Sbjct 66181 CGCTGAGCATCATTAAAGTAAGCTGGAACAGTAATTACAGCGTGCTTGACTTCCTTTCCG 66240 Query 282491 ATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA 282550 | |||||| || | | ||||||||| ||||| ||| | |||| | ||||||| Sbjct 66241 AGATAAGCTTCAGCAATCTCCTTCATTTTAACTAAAACCATAGCAGAAACCTCTTCTGGA 66300 Query 282551 GAATATTGCTTGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT 282609 | |||| || ||| |||| | | || | | || || || | | || Sbjct 66301 GCCAATTGTTTCTTCTCACCCTTGACA-GTAACCTGTATGTAAGGCTTGCTGTCCTTGTT 66359 Query 282610 AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 282669 | || | | |||| | | || |||| ||| || | || |||||| | Sbjct 66360 GACAATCTCATATGGTAACAAAGTCTTATCCTTTTGGACGGAGTCATCCTTAAAACGACG 66419 Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT 282729 || || | || ||| |||| || | || | |||||| | || |||||| | || Sbjct 66420 GCCGATAAGTCTTTTCACATCGAACAATGTCTGAACTGGATTGATTGTAGCTTGGTTCTT 66479 Query 282730 GGCTGCATCTCCAATCAGATGT-TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 282788 |||| || || |||| || | || || |||||||| ||||| ||||| || | | Sbjct 66480 AGCTGACTCACCGATCA-ATCTCTCATCATCAGTAAATGATACATAAGATGGTGTAATAC 66538 Query 282789 GATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAAC 282848 | || || || ||||| | ||| ||||| ||| ||||||||| | | ||| ||||| Sbjct 66539 GGTTGCCCTGTTCATTTGGAATGATTTCTACTCTACCATTTTTGTAGATACCAACACATG 66598 Query 282849 TAAAAGTTGTTCCTAAATCAATACCAATA 282877 | |||| || |||||||| ||||||||| Sbjct 66599 AATAAGTAGTACCTAAATCGATACCAATA 66627 >seq335 Length=109725 Score = 109 bits (120), Expect = 4e-18 Identities = 193/276 (70%), Gaps = 9/276 (3%) Strand=Plus/Plus Query 401131 TATTATGATTTCATTCACAAAGAACTTATTACTTTTTCTGTGGAT--GACGTTCTTAGAT 401188 |||| |||||| ||||| ||||||||| | || || || ||| ||| ||||| Sbjct 4026 TATTTTGATTTTATTCATAAAGAACTTGTA--TTATTTAGTAGATATGACACCACTAGAT 4083 Query 401189 CTGTTCCTAATTTAATGGATGGATTTAAACCATCACATCGCAAAGTATTTTATGGTTCTG 401248 || |||| |||||| |||||||||| ||||| || | |||||| ||| || | Sbjct 4084 CTATTCCAAATTTATTGGATGGATTAAAACCTGGCCAAAGAAAAGTACTTTTTGCAACAT 4143 Query 401249 TTGAAAAGAATATTTATAAGCAAGAGATTAAAGTATCAGATTTGACTGGTTTTGTCTC-G 401307 || ||||||| || |||| || ||||||| || | || |||||| ||| | | Sbjct 4144 TTAAAAAGAAACTTAATAATGAAC---TTAAAGTTGCACAATTAGCTGGTTATGTTGCTG 4200 Query 401308 AATATGACGAAATATCATCATGGTGATCAATCATTATCATCAACTATTGTCGGAATGGCT 401367 || || || || || || || || |||||| | |||||||| |||||| Sbjct 4201 AACATAGCGCT-TACCACCACGGAGAATCATCATTGCAAAGTACTATTGTAAACATGGCT 4259 Query 401368 CAAAATTATGTGGGAAGTAACAATCTCAATTTGTTA 401403 ||||||| ||| |||||||||||||| ||||| ||| Sbjct 4260 CAAAATTTTGTTGGAAGTAACAATCTTAATTTATTA 4295 Score = 107 bits (118), Expect = 1e-17 Identities = 239/358 (67%), Gaps = 33/358 (9%) Strand=Plus/Plus Query 399154 AAAATTATTTTCAAGGAAATTACTTATGTACCTGGTCTATATAAAATTTATGATGAAGTA 399213 ||||| ||| ||| |||| |||||||||||| ||||||| |||| ||||||| | Sbjct 1797 AAAATGGTTTATAAGACCATTAATTATGTACCTGGATTATATAAGATTTTTGATGAAATC 1856 Query 399214 ATTGTAAATGCGGCAGATCATAA--CAAGAGA--TGTCAAA----------CATGTAAT- 399258 | || ||||| || ||| ||| | ||||| | |||| ||| |||| Sbjct 1857 TTAGTTAATGCTGCTGATGTTAAAGCTAGAGAAATTTCAACTAAAAATAATCATTTAATT 1916 Query 399259 -----AT-------TATCAAAGTTGATATCGATC---AAAAAACAGGTCAAATTTCTGTT 399303 || ||| |||||||| || || |||||| || ||||| | ||| Sbjct 1917 GAGAAATGTACTTGTATTAAAGTTGAAATTAATAGAGAAAAAAAAG---AAATTACAGTT 1973 Query 399304 TGGAATAATGGTGATGGTATTGATGTAGCAATTCATAAAGAACATAATATATGGGTACCA 399363 | ||| |||| || || ||| ||| ||| |||| ||||||| | ||| || ||| Sbjct 1974 TATAATGATGGAGAAGGAATTCCAATAGAAATACATAGAGAACATCAAGTATATGTTCCA 2033 Query 399364 TCAATGATTTTTGGAGAACTTTTAACGTCTACTAATTACGATAAAAACGAGGAAAAAACT 399423 | | ||||||||| | | ||||| ||| |||||| ||| | || || || | | | Sbjct 2034 GAATTAATTTTTGGACATTTATTAACTTCTGATAATTATGATGATAATGAAGATAGAGTT 2093 Query 399424 GTTGGTGGTAAAAATGGTTTTGGCGCTAAGCTTGCTAATATTTATTCTGTTGAATTTA 399481 ||| || | |||||||||||| || || ||| ||||||| | ||| |||||||| Sbjct 2094 ACTGGAGGAAGAAATGGTTTTGGAGCAAAACTTACTAATATCTTCTCTAGTGAATTTA 2151 >seq401 Length=300945 Score = 105 bits (116), Expect = 5e-17 Identities = 267/400 (67%), Gaps = 16/400 (4%) Strand=Plus/Minus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 ||||| |||||| ||| ||||| | ||| ||||| ||||| | |||||| || ||| Sbjct 206504 GTTGACTTATCAATAGCACCAACATTCATAATTCCATTCGCATCAATATCAAAAGTTACT 206445 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 ||||||||||| || || || | || || || || || || | |||| ||| || Sbjct 206444 TCAATTTGAGGAACTCCCCTAGGGGCTGGAGGAATTCCCATCATTTCAAATTGTCCAAGT 206385 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590 |||||||| || |||| || ||| |||| ||||| | || ||| |||| Sbjct 206384 AACTTATTATCAGCAGCAAATTCTCTTTCTCCCTGGAAAACCTTAATTCCAACCTGAGTT 206325 Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCT 281649 || ||||| | ||| | |||||| ||| | || ||| || || || |||||||| Sbjct 206324 TGGTTATCCGCTGCAGTGGAGAATACT-TGGCTCTTCTTAGTGGGGATCGTGGTGTTTCT 206266 Query 281650 ATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 281709 || ||| | || | || ||||| ||||| | ||| | ||| | |||||| || Sbjct 206265 ATTAATTAGTCGAGTAAAAACTCCACCCAAAGTTTCGATACCTAAAGATAAAGGAGTAAC 206206 Query 281710 ATCAACTAGGACAATAT-TTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTT 281768 ||||| || | || || |||| |||| || || ||| || | | || | Sbjct 206205 ATCAAGTAACAAAAGATCCTTGA----TTTC-TCCTTT----CAA----AACACCAGCCT 206159 Query 281769 GAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAAC 281808 | || ||||| || |||||| || |||||||| ||||| Sbjct 206158 GTATTGCAGCTCCCATTGCAACGGCCTCATCAGGGTTAAC 206119 Score = 89.7 bits (98), Expect = 4e-12 Identities = 190/281 (68%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 ||||||||||||||||| | ||||||||| || ||| |||| | || | || Sbjct 205724 TCAAAATCTTCACCTCCTAGGGAAGTATTTCCATTTGTTGCTTTTACCTCAAATACTC-- 205667 Query 282254 TCTTCAAGAGAC---AAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 | |||| | |||| || || |||| || || || |||| |||| | || | Sbjct 205666 -CCCCAAGGATCTCTAAAATAGAAATATCAAAAGTGCCTCCTCCCAAATCATA---AACT 205611 Query 282311 ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370 || ||| ||| | | | ||| || | || || || ||||| || || |||||| Sbjct 205610 GCA---ATTGTTTTACCATCGGCTTTCTCCATTCCGTATGCCAAAGCTGCTGCTGTTGGT 205554 Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 || ||||| ||||| ||||| | ||| || || || || || ||||| ||||| Sbjct 205553 TCGTTAATGATTCTTGTCACATTTAAACCTGCTATAGAGCCCGCGTCCTTAGTTGCTTGA 205494 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 | ||| ||||| |||||||| || || |||||||| || || Sbjct 205493 CGTTGAGAATCATTAAAATAGGCTGGCACAGTAATTACAGC 205453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740588521304778