Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq849 107 2e-18 >seq849 Length=33325 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 ||| || ||||| | || ||||||||||| || |||||||| | || || ||| Sbjct 19183 CAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCGTC 19242 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 || | |||||| || ||| |||||| |||||| || ||||| || || ||||| ||||| Sbjct 19243 CTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTGTC 19302 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 ||| ||| ||| | | || | || |||| || |||||||| | || | || Sbjct 19303 TTGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCTACTTCCAATGTTATAGT 19362 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| || ||||| ||||| || || || |||||| Sbjct 19363 CTTTCCCGTCAAAGTTTTAACAAAAATCTGCATA 19396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488538790899600