Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq849 100 5e-16 >seq849 Length=33325 Score = 100 bits (110), Expect = 5e-16 Identities = 100/132 (76%), Gaps = 11/132 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 ||||||| || ||||| |||||||| |||||||| | ||| ||||| ||| Sbjct 19659 ATTCCTTTTGGATATTGTAATCAGAGAGAGTTCTTCCGTCCTCTAATTGTTTCCCCGCAA 19718 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 |||| | | ||||||| | || | ||| ||||||||||||||||||||||||| | || Sbjct 19719 AGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTATCTTGAATCTTTGCTTTAACAT 19778 Query 81760 TTTCAATCGTAT 81771 | ||||| |||| Sbjct 19779 TCTCAATTGTAT 19790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903401567378080