Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq223 143 6e-29 >seq223 Length=111419 Score = 143 bits (158), Expect = 6e-29 Identities = 305/449 (68%), Gaps = 11/449 (2%) Strand=Plus/Minus Query 131576 GTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTC 131635 ||||| || || || || | ||||||||| |||||||| ||||| | | | ||||| Sbjct 59575 GTTCTAGCCTTTTTTGCTGCAAGTGATGGTATTGTTATGGAAAACTTGGCGGTAAATTTT 59516 Query 131636 ATTCAAGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAA 131695 || |||||| | || || |||| | | || || | |||||| ||| ||||| Sbjct 59515 CTTAGAGAAATACAAATACCAGAAGCTAGAATGTATTATGCTTTTCAAATGGCTATTGAA 59456 Query 131696 TCTATTCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGAT 131755 || |||| |||| ||||||||| | ||||| || | ||| |||| | | Sbjct 59455 CAAATACATAATGAGACATATTCATTACTCATTGATAGATATATTAC---TGAAATTAAA 59399 Query 131756 AAAAAT-AAAT--TATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAA 131812 || | |||| | ||||| || | | | || | ||| ||||||| || ||||| Sbjct 59398 GAACGTCAAATGCTTTTTGAAGCAATCTCTCATATTTCAGCAGTTAAAAAAAAGGCAGAG 59339 Query 131813 TGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTT 131872 ||||| | ||||||||| | |||| || ||| || ||| || | | || Sbjct 59338 TGGGCAACTAAATGGATGAATTGTGATAGATCT---TTTGCTGAGAGAATTATTGGATTC 59282 Query 131873 GCTTGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCTTTTGGCTTAAGAA 131931 | |||||||| || || ||||| ||| ||||| |||||||| ||||||||||| || Sbjct 59281 TGTGCAGTTGAAGGAATCTTATTTTCTGGTAGCTTT-TGTGCTATTTTTTGGCTTAAAAA 59223 Query 131932 GCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATT 131991 |||||| | |||||||||||| | || || || || | ||| | ||||||| | | Sbjct 59222 ACGTGGACTTATGCCTGGACTCACCTTTTCAAACGAACTTATCAGCCGTGATGAAGGACT 59163 Query 131992 GCATACTGAATTTGCTATATTAATCTATA 132020 ||| |||| |||||| |||||||||| Sbjct 59162 ACATGCTGATTTTGCTTGCTTAATCTATA 59134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186799829248733