Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq849 116 9e-21 seq445 104 6e-17 >seq849 Length=33325 Score = 116 bits (128), Expect = 9e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | |||||||| || ||||| |||||||| || ||| || Sbjct 19620 CAGATTTTTGTTAAAACTTTGACAGGAAAGACTATCACATTGGAAGTAGAGCCTTCAGAT 19561 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || || |||||||| ||||||||| || ||||||||| || ||| || Sbjct 19560 ACAATTGAGAATGTTAAAGCAAA-GATTCAAGACAAGGAAGGAATTCCACCCGACCAACA 19502 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | |||||||| |||||||| | || |||||||| ||| | | |||||||| | Sbjct 19501 ACGTTTGATCTTCGCAGGAAAGCAACTAGAGGATGGAAGAACTCTATCTGATTACAATAT 19442 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||| || || || ||| | ||| | || ||||| || Sbjct 19441 CCAAAAGGAATCCACTTTACACTTAGTCTTGAGGCT 19406 Score = 111 bits (122), Expect = 4e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || ||||| || || || |||||||| || ||| || Sbjct 19392 CAGATTTTTGTTAAAACTTTGACGGGAAAGACTATAACATTGGAAGTAGAGCCTTCAGAT 19333 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| |||| || |||||||| ||||||||| || ||||||||| || ||| || Sbjct 19332 ACAATCGAGAATGTTAAAGCAAA-GATTCAAGACAAGGAAGGAATTCCACCCGACCAACA 19274 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | ||||| || ||||| || || || || ||||| ||| | | |||||||| | Sbjct 19273 ACGTTTGATCTTTGCAGGAAAACAATTAGAGGACGGAAGAACTCTCTCTGATTACAATAT 19214 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||| ||||| || ||| | || | || ||||||||| || Sbjct 19213 CCAAAAAGAATCCACTTTACATTTGGTATTGAGACTTAGA 19174 Score = 95.1 bits (104), Expect = 3e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | |||||||| || ||||| |||||||| || ||| || Sbjct 19848 CAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACATTGGAAGTAGAGCCTTCAGAT 19789 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || || |||||||| ||||||||| || ||||||||| || || || Sbjct 19788 ACAATTGAGAATGTTAAAGCAAA-GATTCAAGATAAGGAAGGAATTCCACCTGATCAACA 19730 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | ||||| || || || || || || || ||||| ||| | | |||||||| | Sbjct 19729 ACGTTTGATCTTTGCGGGGAAACAATTAGAGGACGGAAGAACTCTCTCTGATTACAATAT 19670 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||| || || || ||| | || | || |||||||| Sbjct 19669 CCAAAAGGAATCCACTTTACATTTGGTATTGAGACT 19634 >seq445 Length=134117 Score = 104 bits (114), Expect = 6e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | |||||||| || ||||| |||||||| || ||| ||||| | || Sbjct 79235 AAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAGCCTTCCGACACCATTGAGAAT 79294 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| || || ||||| || ||| || || || | || ||||| Sbjct 79295 GTTAAGGCAAAGATCCAGGACAAAGAGGGCATTCCACCTGATCAACAGCGTCTGATCTTT 79354 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| ||||||||||| || ||||| | || ||||| | ||||| |||||| Sbjct 79355 GCAGGAAAGCAATTGGAAGATGGCAGAACTTTATCTGACTACAATATTCAGAAGGAGTCT 79414 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || | || | || |||||||| || Sbjct 79415 ACCTTACATTTGGTGCTGAGACTTAGA 79441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181807883806613