Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_026430.1
Length=125767
Score E
Sequences producing significant alignments: (Bits) Value
seq849 107 2e-18
seq445 82.4 6e-11
>seq849
Length=33325
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 106248 AAGAGTTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAA 106307
|||| | ||| ||||| ||||||||||| || ||||| || ||||| || || |||||
Sbjct 19863 AAGAATACAAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACATTGGAA 19804
Query 106308 ACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTG 106367
||| || ||| | ||| | || ||| ||| ||| || || ||||| |
Sbjct 19803 GTAGAGCCTTCAGATACAATTGAGAATGTTAAAGCAAAGATTCAAGATAAGGAAGGAATT 19744
Query 106368 CCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATG 106427
|| |||||||||| | | || | |||||| ||||||||||| || | |||| |
Sbjct 19743 CCACCTGATCAACAACGTTTGATCTTTGCGGGGAAACAATTAGAGGACGGAAGAACTCTC 19684
Query 106428 GGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474
|||||||| || ||||| ||||| || ||||||| ||||||||
Sbjct 19683 TCTGATTACAATATCCAAAAGGAATCCACTTTACATTTGGTATTGAG 19637
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| |||||||||||||| ||||| || ||||| || || ||||| ||| ||
Sbjct 19395 ATGCAGATTTTTGTTAAAACTTTGACGGGAAAGACTATAACATTGGAAGTAGAGCCTTCA 19336
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| | | | | || ||| ||| ||| ||||| ||||| | || || |||
Sbjct 19335 GATACAATCGAGAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCACCCGACCAA 19276
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
||| | | || | ||| || ||||||||||| || | |||| | ||||||||
Sbjct 19275 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGACGGAAGAACTCTCTCTGATTACAAT 19216
Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487
|| ||||||||||| || ||||||| |||||||| | |||| |||
Sbjct 19215 ATCCAAAAAGAATCCACTTTACATTTGGTATTGAGACTTAGAGGTGGA 19168
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| |||||||||||||| ||||| || ||||| || || ||||| ||| ||
Sbjct 19623 ATGCAGATTTTTGTTAAAACTTTGACAGGAAAGACTATCACATTGGAAGTAGAGCCTTCA 19564
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| | ||| | || ||| ||| ||| ||||| ||||| | || || |||
Sbjct 19563 GATACAATTGAGAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCACCCGACCAA 19504
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
||| | | || | || || || ||| |||| ||| | |||| | ||||||||
Sbjct 19503 CAACGTTTGATCTTCGCAGGAAAGCAACTAGAGGATGGAAGAACTCTATCTGATTACAAT 19444
Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486
|| ||||| ||||| || |||| ||||| |||||| | |||| ||
Sbjct 19443 ATCCAAAAGGAATCCACTTTACACTTAGTCTTGAGGCTCAGAGGTGG 19397
>seq445
Length=134117
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316
|| |||||||||||||| ||||| || || || |||||||| || ||||| || ||
Sbjct 79217 AAGATGCAAATTTTTGTAAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAGCCT 79276
Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376
||| | ||| | || || ||| || |||||||| ||| | || ||||
Sbjct 79277 TCCGACACCATTGAGAATGTTAAGGCAAAGATCCAGGACAAAGAGGGCATTCCACCTGAT 79336
Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436
||||| | || || | ||| || || ||||| |||||| | |||| | || |||
Sbjct 79337 CAACAGCGTCTGATCTTTGCAGGAAAGCAATTGGAAGATGGCAGAACTTTATCTGACTAC 79396
Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474
|| || || || || ||||| ||||||| || ||||
Sbjct 79397 AATATTCAGAAGGAGTCTACCTTACATTTGGTGCTGAG 79434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 402325417406624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |