Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq849 107 2e-18 seq445 82.4 6e-11 >seq849 Length=33325 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106248 AAGAGTTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAA 106307 |||| | ||| ||||| ||||||||||| || ||||| || ||||| || || ||||| Sbjct 19863 AAGAATACAAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACATTGGAA 19804 Query 106308 ACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTG 106367 ||| || ||| | ||| | || ||| ||| ||| || || ||||| | Sbjct 19803 GTAGAGCCTTCAGATACAATTGAGAATGTTAAAGCAAAGATTCAAGATAAGGAAGGAATT 19744 Query 106368 CCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATG 106427 || |||||||||| | | || | |||||| ||||||||||| || | |||| | Sbjct 19743 CCACCTGATCAACAACGTTTGATCTTTGCGGGGAAACAATTAGAGGACGGAAGAACTCTC 19684 Query 106428 GGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474 |||||||| || ||||| ||||| || ||||||| |||||||| Sbjct 19683 TCTGATTACAATATCCAAAAGGAATCCACTTTACATTTGGTATTGAG 19637 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||||||||| ||||| || ||||| || || ||||| ||| || Sbjct 19395 ATGCAGATTTTTGTTAAAACTTTGACGGGAAAGACTATAACATTGGAAGTAGAGCCTTCA 19336 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | | | | || ||| ||| ||| ||||| ||||| | || || ||| Sbjct 19335 GATACAATCGAGAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCACCCGACCAA 19276 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| || ||||||||||| || | |||| | |||||||| Sbjct 19275 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGACGGAAGAACTCTCTCTGATTACAAT 19216 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || ||||||||||| || ||||||| |||||||| | |||| ||| Sbjct 19215 ATCCAAAAAGAATCCACTTTACATTTGGTATTGAGACTTAGAGGTGGA 19168 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||||||||| ||||| || ||||| || || ||||| ||| || Sbjct 19623 ATGCAGATTTTTGTTAAAACTTTGACAGGAAAGACTATCACATTGGAAGTAGAGCCTTCA 19564 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| ||| ||| ||||| ||||| | || || ||| Sbjct 19563 GATACAATTGAGAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCACCCGACCAA 19504 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | || || || ||| |||| ||| | |||| | |||||||| Sbjct 19503 CAACGTTTGATCTTCGCAGGAAAGCAACTAGAGGATGGAAGAACTCTATCTGATTACAAT 19444 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| ||||| || |||| ||||| |||||| | |||| || Sbjct 19443 ATCCAAAAGGAATCCACTTTACACTTAGTCTTGAGGCTCAGAGGTGG 19397 >seq445 Length=134117 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 || |||||||||||||| ||||| || || || |||||||| || ||||| || || Sbjct 79217 AAGATGCAAATTTTTGTAAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAGCCT 79276 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 ||| | ||| | || || ||| || |||||||| ||| | || |||| Sbjct 79277 TCCGACACCATTGAGAATGTTAAGGCAAAGATCCAGGACAAAGAGGGCATTCCACCTGAT 79336 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 ||||| | || || | ||| || || ||||| |||||| | |||| | || ||| Sbjct 79337 CAACAGCGTCTGATCTTTGCAGGAAAGCAATTGGAAGATGGCAGAACTTTATCTGACTAC 79396 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474 || || || || || ||||| ||||||| || |||| Sbjct 79397 AATATTCAGAAGGAGTCTACCTTACATTTGGTGCTGAG 79434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402325417406624