Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq445 118 1e-21 seq849 113 5e-20 >seq445 Length=134117 Score = 118 bits (130), Expect = 1e-21 Identities = 178/249 (71%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| |||| || ||| | |||| || || ||||| ||||| |||||||| | Sbjct 79446 CCACCTCTAAGTCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGAT 79387 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | || | || || | || || |||||||| |||| |||||| ||||| || || Sbjct 79386 AAAGTTCTGCCA-TCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGG 79328 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| ||||| || || || ||| || || || | |||||||| | || || Sbjct 79327 AATGCCCTCTTTGTCCTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGCTCAAC 79268 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGTT 134725 || | || ||||| || || ||||||||||| || ||||||||||| || | | ||| Sbjct 79267 TTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCATCTTCTCTGTGTC 79208 Query 134726 CAACGTTTA 134734 | | ||||| Sbjct 79207 CTA-GTTTA 79200 >seq849 Length=33325 Score = 113 bits (124), Expect = 5e-20 Identities = 172/244 (70%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||||| ||| || | |||| |||||||||||||| || ||||| || Sbjct 19625 CCACCTCTGAGTCTCAATACCAAATGTAAAGTGGATTCCTTTTGGATATTGTAATCAGAG 19684 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || ||| || | ||||| || ||||| |||||||| || ||||| || || Sbjct 19685 AGAGTTCTTCCGTCCTCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGGTGGA 19744 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || |||||||| ||| ||| || || | ||| || || | || || Sbjct 19745 ATTCCTTCCTTATCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACT 19804 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT-TTTGTTTTTGTT 134725 || | || || || || || || ||||| ||||| ||||| ||||| ||||| || || Sbjct 19805 TCCAATGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTTGTATTCTTT 19864 Query 134726 CAAC 134729 ||| Sbjct 19865 GAAC 19868 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| ||||| |||| ||| || | |||| |||||||| ||||| || ||||| || Sbjct 19167 TTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAG 19226 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | || ||| || | ||||| |||||||| |||||||| || || ||||| | Sbjct 19227 AGAGAGTTCTTCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTG 19286 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || |||||||| ||| ||| || || | ||| || || | || | Sbjct 19287 GAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCTA 19346 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | || || || || || || ||||||||||| ||||| ||||| Sbjct 19347 CTTCCAATGTTATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || |||||||| | ||| || | ||||| |||||||||||||| || ||||| || | Sbjct 19397 CCACCTCTGAGCCTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCAGAT 19456 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | | | | || || || || || ||||| || |||||||| || || ||||| || Sbjct 19457 AGAGTTCTTCCA-TCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGTGG 19515 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || |||||||| ||| ||| || || | ||| || || | || || Sbjct 19516 AATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTAC 19575 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || || || || || || ||||||||||| ||||| ||||| Sbjct 19576 TTCCAATGTGATAGTCTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505393011189560