Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq290 304 2e-77 seq223 246 4e-60 >seq290 Length=478353 Score = 304 bits (336), Expect = 2e-77 Identities = 1169/1815 (64%), Gaps = 66/1815 (4%) Strand=Plus/Plus Query 68412 ATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTT 68471 ||| || || |||||||| | |||| |||| || || |||||||| || || || Sbjct 253087 ATAATAAATGCCGGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATCGATGATAACTT 253146 Query 68472 GGAATAACTTGG-ATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTC 68530 | | || |||| || | ||||||||||||| || ||| ||| | | | | Sbjct 253147 TGCA-AAGTTGGCATTTTCCATATGAATATTCAAAGACTGAGATTGGCAAACATATGGAC 253205 Query 68531 CTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAA 68590 | |||||||| ||||| | || | ||||||| ||||||||||| ||||||| ||| Sbjct 253206 CCCTATCTGCAGCCATATCAATCACCGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAA 253265 Query 68591 TCTGTTTGATATCATCTGGAAGGCTCG---TATTTTGAATGGATCCACCATCGGATATAA 68647 || ||||| ||||||| | | | |||||||| |||| || | || Sbjct 253266 GCTCACGTATATCTTCTGGAATTGTAGGTATGTTTTGAATACTTCCATTATTTGC---AA 253322 Query 68648 TTATATT---CTTGATCTCATCATTCCACAATT----TTCTCTCCGTTAAAACTCTAAGG 68700 ||||||| ||| | | ||||| ||| ||| |||| | ||| | | || Sbjct 253323 TTATATTTTGCTTAAGCCTATCATCCCATAATCCAAGTTCTAAC----AAATCATTTAGT 253378 Query 68701 AGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTG 68760 | ||| || || |||| ||||| ||||||| ||| |||||| |||||||| Sbjct 253379 AAATGTGGGTTCACTACAAAGAATTCACCAGATAGCACCCTACGATGATAAATATTTGAA 253438 Query 68761 GTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATA 68820 ||| | || || | | ||||| || || | ||| || | ||| || ||||| ||||| Sbjct 253439 GTAAAGGGCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAGAGGCAGTAGGCATT 253498 Query 68821 GGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTC 68880 || | | || | | ||| | || |||| | |||| | ||||| || | | Sbjct 253499 GGAGATATTAAGAGAGAATTACGAATCCCATACTTAGAGATTCTTTCTTTAAGTGAATCC 253558 Query 68881 CAATCCCAAAGATCAGA---TGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTA 68937 || || ||||| |||| |||| ||| ||| | ||| |||| | || || ||| Sbjct 253559 CAGTCACAAAGCCCAGAATCTGGTGTAACTCCCCACATATCAAATTGCAAGATACCTTTA 253618 Query 68938 CTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTT 68997 || ||| ||||||| ||||| || || || || || | ||| || || ||||| || Sbjct 253619 CTCGCAGGTGATCCAGAATATGACTCGTATGGCCCATCTTTTTCTGCAAGCTCACAGCTA 253678 Query 68998 GCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCT 69057 ||||| | || ||||||| || ||| ||||| | ||||| || | || |||| Sbjct 253679 GCCTCAAGAGCTGCGTAATACATAACTTCAAAAATTTCTTTATTCAGCTTTTTAGCTT-- 253736 Query 69058 AGACTATCGAATGGATAATGTAAAAGAA------TAAATGCA-TCTGCCAATCCCTGAAC 69110 |||| | ||| | | | ||| |||| ||| || || | || || || Sbjct 253737 ----TATCTGAGTCATACGGCATACGAAGCATCATAAA-GCAGTCCGCGAGCCCTTGGAC 253791 Query 69111 CCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATA 69170 || || || | || | |||||| ||||||| ||| | |||||| | | ||| || Sbjct 253792 GCCGATTCCCAACGGACGATGTCTTAGATTTGAATTTTTACATTCTGGGAGGGAATAGTA 253851 Query 69171 ATTAATATCTATAATTTTATTAAGATT--TCGGACTACTACTTTAACCACGTCCTTTAGT 69228 || || | | |||||| | ||| ||| | | || || || ||||||| Sbjct 253852 CCCAAAGTCAACTACTTTATTTAAATTCCTCGTAATC--ACCTTCGTAACTTCCTTTAAC 253909 Query 69229 TTGAGAAAATCAAATCGTCC---ATCTATAACAAACATATTCAGTG---CTACAGATGCT 69282 ||| ||||| |||| | |||| || ||| | ||| || | | |||||| Sbjct 253910 TTGTCAAAATTAAATGTTTTGTTATCTTTATCAACGAACTTCGGTAACCCGATAGATGCC 253969 Query 69283 AGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTA 69342 |||||||||||||| | |||| | | | |||| ||||| ||||| |||| ||| Sbjct 253970 AGATTACAAACTGCAATTTCATCTCCACTAGTGTATTCCATTATTTCTGTGCATAAGTTA 254029 Query 69343 CTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAA 69402 || | ||||| |||| ||| | || ||||| || | || || ||||| ||| Sbjct 254030 CTTGAGACAATAGTTCCCAAATTCTTTTGGTTACTTTTCCTATTTGCAGCATCCTTATAA 254089 Query 69403 AGAATAAACGGAGTACCAGTTTCAATCTGAGATT-CGATAATAGATTTCCAAACGACCCT 69461 |||||| || || || |||||||| |||| | | ||| || | ||||| Sbjct 254090 CAAATAAATGGCGTTCCCGTTTCAATTTGAGCCTGCAATATTAAAAA-CCAAAGTTTTTG 254148 Query 69462 AGCATTTATTACGGTCTTGTA---ACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTC 69518 || || || |||||| |||| | |||||| |||| | || | ||| Sbjct 254149 CGCTTTCAT---GGTCTTTCTCCCACGCCCTTGTTTTTCGTATTCTTCGTACAAT--TTC 254203 Query 69519 G--AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || ||||| ||||||||||| | |||||| || || | || |||||||| | | Sbjct 254204 CTAAACTCATCACCCCAAACATCCTGCAATCCTCTGCACTCGTCCGGGCACATCAAGGTC 254263 Query 69577 CACACATCATCATCCTT---AACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA 69633 || ||| | |||||| ||| | | |||||||||||| |||| |||||| || | Sbjct 254264 CA---ATCTTGATCCTTTTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGA 254320 Query 69634 AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCC 69693 ||||| || | ||| | ||||| ||||| |||||| ||| || | |||||| Sbjct 254321 AAGAGGTCACGACATCTCATCTCTTCCTTTCCGTGGTTTTTTCTAATTTCAATAAACTCT 254380 Query 69694 ATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCT 69753 | || || ||||||||||||| | ||| || || || | || ||||| || Sbjct 254381 ACAACGTCCAAATGCCATGGTTCCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCG 254440 Query 69754 CCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTA 69813 || ||||| || || || ||||| | |||||| || | |||||| ||||| | |||||| Sbjct 254441 CCTTGATCAATATACCTAGCAGTATCATTATAAACGCGCAGCATTGGAATTAGTCCATTA 254500 Query 69814 GATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGA 69873 || || ||||| ||||| |||||| || || | | ||||||||| | | | Sbjct 254501 GACTTCCCATTGGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACC 254560 Query 69874 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCC 69933 || | || ||||| | || || ||||| | | |||||| | ||||| Sbjct 254561 CCAAGACCACCTGCAGTCTTGCTAATATTTGCACATTTAGTTAGCGTGTCAAAAATACCG 254620 Query 69934 TCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTT 69993 | ||| || ||| || | || | ||| || |||||||| | || ||| Sbjct 254621 TTTATTGAGTCTTCTGGAATTCTGAGCAAAAAGCAAGATGACATTTGTGGTCGTGGTGTT 254680 Query 69994 CCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTAT 70053 || | ||| || | |||||| | || || || || |||||| || | | | |||| Sbjct 254681 CCTGAATTGAAAAGTGTAGGTGTAGCATGTGTAAAATATTTTTGCGACATTAACTCGTAT 254740 Query 70054 GTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACAT 70112 || |||| ||| | ||| ||||| |||| ||| || || | || ||||| | | Sbjct 254741 GTCTCAAGAGCAGCTTCAATATCACCAC-AATGTATACCACAAGAAACTCGCATTAGAAG 254799 Query 70113 ATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGT 70172 |||||| |||| ||| || ||| |||| ||| | | || || ||| |||| ||||| Sbjct 254800 ATGCTGTGGTCTTTCCACAACTTTGTTATCAATTCTGAGAAGATAGGATCTTTCTAGAGT 254859 Query 70173 TTTAAACCCAAAATA 70187 || || ||||||| Sbjct 254860 CTTGAAGGCAAAATA 254874 >seq223 Length=111419 Score = 246 bits (272), Expect = 4e-60 Identities = 569/849 (67%), Gaps = 10/849 (1%) Strand=Plus/Plus Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 |||||||||| ||||| | || ||||| ||||| ||||| |||| | ||| ||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 |||| ||||||| ||||| || |||||||| |||| | |||| | ||| | Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATCTAAAGCAAAAAGTA 58974 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 |||||| || |||||||| || ||| ||| | | ||||||| || || || | Sbjct 58975 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGAT 59034 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 ||| || |||| || || || | | |||| | || || || |||| || || Sbjct 59035 CAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGATTT 59094 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATG---TTTAAACATTAAGCAGGCGA 39623 | |||| || | | | ||| | | ||| | | |||| | |||||||| || | Sbjct 59095 GTTGTACT--CT-AGAAGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAAGCAA 59151 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 | ||| |||||| || ||||| | || || | |||||| ||||| ||||||||||||| Sbjct 59152 AATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGGCA 59211 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCCT 39742 | || ||||| ||||| |||||||| || ||| |||||| | |||||||| ||||| ||| Sbjct 59212 TAAGTCCACGTTTTTTAAGCCAAAAAATAGCA-CAAAAGCTACCAGAAAATAAGATTCCT 59270 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTTC 39802 || ||||| ||| ||| || |||||| | || | ||||| || ||||| || Sbjct 59271 TCAACTGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTATCACAATTCATCCATTTA 59330 Query 39803 TGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAA 39862 |||||| || || || || || || | || || || | ||| || Sbjct 59331 GTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAAAAGCATT 59390 Query 39863 TGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGG 39922 || ||| | | | || ||| |||| |||| || | | ||| | || ||| Sbjct 59391 TGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGAATATGTCTCATTATGT 59450 Query 39923 ATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 || | |||||| ||||| ||||| | ||| | ||| ||||| | ||||||| ||| Sbjct 59451 ATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCTTCTGGTATTTGTATTTCT 59510 Query 39983 -GAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041 || ||||| || ||||||| ||||| | || || |||||||| || |||||||| || Sbjct 59511 CTAAGAAAAT-TTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAAAAAGGC 59569 Query 40042 CAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101 | |||| ||| ||||| | | ||||| | | | | | ||| || || ||| Sbjct 59570 TAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTTTCCCAATCTCTGGAATC 59629 Query 40102 TTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTT 40161 || || ||| | |||||||| |||||| || || || || ||||| ||||| Sbjct 59630 TTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATACATTGA 59689 Query 40162 CCATATATC 40170 ||| ||||| Sbjct 59690 CCAAATATC 59698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686901475834920