Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq223 123 2e-23 >seq223 Length=111419 Score = 123 bits (136), Expect = 2e-23 Identities = 385/580 (66%), Gaps = 21/580 (4%) Strand=Plus/Minus Query 43714 AATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGC 43773 |||| ||| | | || || ||| |||||| |||||||| | || ||||||||| | Sbjct 59710 AATTTAAT-TGAAGATATTTGGTCAATGTATAAAAAAGCTGAAGCATCATTTTGGGTTAC 59652 Query 43774 AGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG-ATTGCATTAAAACCACAAGAAA 43832 |||||| ||||||| | | |||| | | ||||| | | ||||| | |||| Sbjct 59651 TGAAGAAATTGATTTAAGTCAAGATTCCAGAGATTGGGAAAGTCTTAAAGATCCT-GAAA 59593 Query 43833 AACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAA 43892 ||| ||||| | ||| | || ||||||||||| || || || || || | |||| Sbjct 59592 GACACTTTATCAAATATGTTCTAGCCTTTTTTGCTGCAAGTGATGGTATTGTTATGGAAA 59533 Query 43893 ATTTGGTTAGTCGGTTTGCGCA-AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGG 43951 | |||| || ||| | | |||| | ||| |||||||||| || | ||||| Sbjct 59532 ACTTGGCG-GTAAATTTTCTTAGAGAAATACAAATACCAGAAGCTAGAATGTATTATGCT 59474 Query 43952 TTTCAAATTGCCATAGAAAATATTCAT--TCGGAAATGTACAGTCTTC--TGATAGATAC 44007 |||||||| || || ||| | || ||| | || || | || | || ||||||||| Sbjct 59473 TTTCAAATGGCTATTGAACAAATACATAATGAGACATATTCATTACTCATTGATAGATAT 59414 Query 44008 GTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGC 44067 | | ||| | ||| || || | || || || || || | | || Sbjct 59413 ATTACTGAAATTAAAGAACGTCAA--AT-GCTTTTTGAA-GCAATCTCTCATATTTCAGC 59358 Query 44068 GATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGA 44127 ||||| | || ||||| ||||| ||||||||| |||| || ||||||| || Sbjct 59357 AGTTAAAAAAAAGGCAGAGTGGGCAACTAAATGGATGAATTGTGATAGATCTTTTGCTGA 59298 Query 44128 ACGACTTGTCGCGTT---TGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGG 44183 || || | | || |||||||| |||| || || ||||| || | | |||| | Sbjct 59297 GAGAATTATTGGATTCTGTGCAGTTG---AAGGAATCTTATTTTCTGGTAGCTTTTGTG- 59242 Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 | || |||||| | || ||||| || | |||||||| | || |||||||| || | | Sbjct 59241 CTATTTTTTGGCTTAAAAAACGTGGACTTATGCCTGGACTCACCTTTTCAAACGAACTTA 59182 Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 | || ||||||||||| ||||| |||||||||||||| Sbjct 59181 TCAGCCGTGATGAAGGACTACATGCTGATTTTGCTTGCTT 59142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451868072265