Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq223 123 2e-23
>seq223
Length=111419
Score = 123 bits (136), Expect = 2e-23
Identities = 385/580 (66%), Gaps = 21/580 (4%)
Strand=Plus/Minus
Query 43714 AATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGC 43773
|||| ||| | | || || ||| |||||| |||||||| | || ||||||||| |
Sbjct 59710 AATTTAAT-TGAAGATATTTGGTCAATGTATAAAAAAGCTGAAGCATCATTTTGGGTTAC 59652
Query 43774 AGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG-ATTGCATTAAAACCACAAGAAA 43832
|||||| ||||||| | | |||| | | ||||| | | ||||| | ||||
Sbjct 59651 TGAAGAAATTGATTTAAGTCAAGATTCCAGAGATTGGGAAAGTCTTAAAGATCCT-GAAA 59593
Query 43833 AACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAA 43892
||| ||||| | ||| | || ||||||||||| || || || || || | ||||
Sbjct 59592 GACACTTTATCAAATATGTTCTAGCCTTTTTTGCTGCAAGTGATGGTATTGTTATGGAAA 59533
Query 43893 ATTTGGTTAGTCGGTTTGCGCA-AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGG 43951
| |||| || ||| | | |||| | ||| |||||||||| || | |||||
Sbjct 59532 ACTTGGCG-GTAAATTTTCTTAGAGAAATACAAATACCAGAAGCTAGAATGTATTATGCT 59474
Query 43952 TTTCAAATTGCCATAGAAAATATTCAT--TCGGAAATGTACAGTCTTC--TGATAGATAC 44007
|||||||| || || ||| | || ||| | || || | || | || |||||||||
Sbjct 59473 TTTCAAATGGCTATTGAACAAATACATAATGAGACATATTCATTACTCATTGATAGATAT 59414
Query 44008 GTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGC 44067
| | ||| | ||| || || | || || || || || | | ||
Sbjct 59413 ATTACTGAAATTAAAGAACGTCAA--AT-GCTTTTTGAA-GCAATCTCTCATATTTCAGC 59358
Query 44068 GATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGA 44127
||||| | || ||||| ||||| ||||||||| |||| || ||||||| ||
Sbjct 59357 AGTTAAAAAAAAGGCAGAGTGGGCAACTAAATGGATGAATTGTGATAGATCTTTTGCTGA 59298
Query 44128 ACGACTTGTCGCGTT---TGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGG 44183
|| || | | || |||||||| |||| || || ||||| || | | |||| |
Sbjct 59297 GAGAATTATTGGATTCTGTGCAGTTG---AAGGAATCTTATTTTCTGGTAGCTTTTGTG- 59242
Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243
| || |||||| | || ||||| || | |||||||| | || |||||||| || | |
Sbjct 59241 CTATTTTTTGGCTTAAAAAACGTGGACTTATGCCTGGACTCACCTTTTCAAACGAACTTA 59182
Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283
| || ||||||||||| ||||| ||||||||||||||
Sbjct 59181 TCAGCCGTGATGAAGGACTACATGCTGATTTTGCTTGCTT 59142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397451868072265
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |