Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq290 123 3e-23 >seq290 Length=478353 Score = 123 bits (136), Expect = 3e-23 Identities = 858/1356 (63%), Gaps = 44/1356 (3%) Strand=Plus/Plus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || || |||| || | || ||||| | ||||| ||||| || || |||| || ||| Sbjct 253427 TAAATATTTGAAGTAAAGGGCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAGAG 253486 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 || || |||||||| | || || ||| ||||||| || | || ||| | ||| Sbjct 253487 GCAGTAGGCATTGGAGATATTAAGAGAGAATTACGAATCCCATACTTAGAGATTCTTTCT 253546 Query 110828 TTGAGAACATCCCAGTCGTAGTT----GAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 || || ||||||||| | || |||| | || | ||||||| ||||| || Sbjct 253547 TTAAGTGAATCCCAGTCACAAAGCCCAGAATCTGGTGTAAC-TCCCCACATATCAAATTG 253605 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 | | |||| ||| || || || | | | || || | || | ||| || Sbjct 253606 CAAGATACCTTTACTCGCAGGTGATCCAGAATATGACTCGTATGGCCCATCTTTTTCTGC 253665 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | |||||||| ||||| || | ||||| |||||| |||||| || ||||| Sbjct 253666 AAGCTCACAGCTAGCCTCAAGAGCTGCGTAATACATAACTTCAAAAATTTCTTTATTCAG 253725 Query 111004 CTCCTTGGCTTCATCTGAATCAAATG-CGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 || || |||| |||||| ||| | | | || || || ||||| |||||||| | Sbjct 253726 CTTTTTAGCTTTATCTGAGTCATACGGCATA-CGAAGCATCATAAAGCAGTCCGCGAGCC 253784 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGG 111122 |||| || || | || | || | |||| | ||| || ||| || ||| || Sbjct 253785 CTTGGACGCCGATTCCCAACGGACGATGTCTTAGATTTGAATTTTTA-CATTCTGGGAGG 253843 Query 111123 GA-TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 111181 || || | ||||| ||| |||| ||| | |||| | ||| || | ||| Sbjct 253844 GAATAGTACCCAAAGTCAACTACTTTATTTAAATTCCTCGTAATCACCTTCGTAACTTCC 253903 Query 111182 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 111241 | | || ||| ||| ||| || | |||| || || |||| || | |||| Sbjct 253904 TTTAACTTGTCAAAATTAAATGTTTTGTTATCTTTATCAACGAACTTCGGTAACCCGATA 253963 Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 ||||||| ||| ||||| || | ||||| | ||||| || | |||||||| ||| Sbjct 253964 GATGCCAGATTACAAACTGCAATTTCATCTCCACTAGTGTATTCCATTATTTCTGTGCAT 254023 Query 111302 AAGTTGGAACTCTT---AATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT-GCACGC 111357 ||||| ||| ||| || |||||||||||||||||||| ||| | || ||| || Sbjct 254024 AAGTT---ACTTGAGACAATAGTTCCCAAATTCTTTTGGTTACTTTTCCTATTTGCA-GC 254079 Query 111358 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 |||||| || || | ||||| ||||| || | || | | | || ||| Sbjct 254080 ATCCTTATAACAAATAAATGGCGTTCCCGTTTCAATTTGAGCCTGCAATATTAAAAACCA 254139 Query 111418 AACATCGGCGGCTGGTACAATGGCGTTGGCCC--GTCCCTCCGCCTCGTACTTTGTGTAG 111475 || | ||| | || | | || ||| | || | ||||| | | ||| Sbjct 254140 AAGTTTTTGCGCT--TTCATGGTCTTTCTCCCACGCCCTTGTTTTTCGTATTCTTCGTAC 254197 Query 111476 AGGGCTTC--AAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC-CTTGTCTGGACAG 111532 | ||| |||||| |||||| | || | ||| ||| || ||| || || Sbjct 254198 AAT--TTCCTAAACTCATCACCCCAAACATCCTGCAATCCTC-TGCACTCGTCCGGGCAC 254254 Query 111533 AAAAGAGACCA---TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCAC 111589 | | | ||| |||| | ||| ||||||| || ||| || || || |||| ||| Sbjct 254255 ATCAAGGTCCAATCTTGATC--CTTT-TCAACCCTCTCCATAAATAGATCAGGAACCCAA 254311 Query 111590 AGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 111649 |||| | |||||| || | ||| | |||||| | || ||||| || | ||| Sbjct 254312 AGGGCAGGAAAGAGGTCACGACATCTCATCTCTTCCTTTCCGTGGTTTTTTCTAATTTCA 254371 Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGA 111709 | ||||| | | ||| |||||||| || | ||| | ||| |||| || || || Sbjct 254372 ATAAACTCTACAACGTCCAAATGCCATGGTTCCAAATAAATTGCAATAGCACCTTTACGT 254431 Query 111710 CGCCCAGC---TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 111766 |||| | ||||| | ||| | || || | ||| | ||||| ||||||||||| Sbjct 254432 TTCCCACCGCCTTGATCAATATACCTAGCAGTATCATTATAAACGCGCAGCATTGGAATT 254491 Query 111767 ATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGG 111826 | |||| || | ||||| || || |||||| || | | |||| | || | Sbjct 254492 AGTCCATTAGACTTCCCATTGGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTT 254551 Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTT--TGAGATTTGCGCACACTCCGTAAGAGTTC 111884 | || ||||| ||| || || ||| | | |||||| ||| | || || || Sbjct 254552 ACTGCCACCCCAAGACCACCTGCAGTCTTGCTAATATTTGC--ACATTTAGTTAGCGTGT 254609 Query 111885 CATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG 111944 || | |||||||| |||||||| || | || | |||||| ||||| || | Sbjct 254610 CAAAAATACCGTTTATTGAGTCTTCTGGAATTCTGAGCAAAAAGCAAGATGACATTTGTG 254669 Query 111945 GTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG-GAC 112003 ||| |||||| || | |||||| || || ||||| || || | || ||| || | ||| Sbjct 254670 GTCGTGGTGTTCCTGAATTGAAAAGTGTAGGTGTAGCATGTGTAAA-ATATTTTTGCGAC 254728 Query 112004 ATCTTGTCGTATGTCTCCAAGA-CAGAATCAATGTC 112038 || |||||||||| ||||| ||| ||||| || Sbjct 254729 ATTAACTCGTATGTCT-CAAGAGCAGCTTCAATATC 254763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628025303608800