Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq290 123 3e-23
>seq290
Length=478353
Score = 123 bits (136), Expect = 3e-23
Identities = 858/1356 (63%), Gaps = 44/1356 (3%)
Strand=Plus/Plus
Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767
|| || |||| || | || ||||| | ||||| ||||| || || |||| || |||
Sbjct 253427 TAAATATTTGAAGTAAAGGGCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAGAG 253486
Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827
|| || |||||||| | || || ||| ||||||| || | || ||| | |||
Sbjct 253487 GCAGTAGGCATTGGAGATATTAAGAGAGAATTACGAATCCCATACTTAGAGATTCTTTCT 253546
Query 110828 TTGAGAACATCCCAGTCGTAGTT----GAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883
|| || ||||||||| | || |||| | || | ||||||| ||||| ||
Sbjct 253547 TTAAGTGAATCCCAGTCACAAAGCCCAGAATCTGGTGTAAC-TCCCCACATATCAAATTG 253605
Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943
| | |||| ||| || || || | | | || || | || | ||| ||
Sbjct 253606 CAAGATACCTTTACTCGCAGGTGATCCAGAATATGACTCGTATGGCCCATCTTTTTCTGC 253665
Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003
| |||||||| ||||| || | ||||| |||||| |||||| || |||||
Sbjct 253666 AAGCTCACAGCTAGCCTCAAGAGCTGCGTAATACATAACTTCAAAAATTTCTTTATTCAG 253725
Query 111004 CTCCTTGGCTTCATCTGAATCAAATG-CGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062
|| || |||| |||||| ||| | | | || || || ||||| |||||||| |
Sbjct 253726 CTTTTTAGCTTTATCTGAGTCATACGGCATA-CGAAGCATCATAAAGCAGTCCGCGAGCC 253784
Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGG 111122
|||| || || | || | || | |||| | ||| || ||| || ||| ||
Sbjct 253785 CTTGGACGCCGATTCCCAACGGACGATGTCTTAGATTTGAATTTTTA-CATTCTGGGAGG 253843
Query 111123 GA-TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 111181
|| || | ||||| ||| |||| ||| | |||| | ||| || | |||
Sbjct 253844 GAATAGTACCCAAAGTCAACTACTTTATTTAAATTCCTCGTAATCACCTTCGTAACTTCC 253903
Query 111182 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 111241
| | || ||| ||| ||| || | |||| || || |||| || | ||||
Sbjct 253904 TTTAACTTGTCAAAATTAAATGTTTTGTTATCTTTATCAACGAACTTCGGTAACCCGATA 253963
Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301
||||||| ||| ||||| || | ||||| | ||||| || | |||||||| |||
Sbjct 253964 GATGCCAGATTACAAACTGCAATTTCATCTCCACTAGTGTATTCCATTATTTCTGTGCAT 254023
Query 111302 AAGTTGGAACTCTT---AATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT-GCACGC 111357
||||| ||| ||| || |||||||||||||||||||| ||| | || ||| ||
Sbjct 254024 AAGTT---ACTTGAGACAATAGTTCCCAAATTCTTTTGGTTACTTTTCCTATTTGCA-GC 254079
Query 111358 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417
|||||| || || | ||||| ||||| || | || | | | || |||
Sbjct 254080 ATCCTTATAACAAATAAATGGCGTTCCCGTTTCAATTTGAGCCTGCAATATTAAAAACCA 254139
Query 111418 AACATCGGCGGCTGGTACAATGGCGTTGGCCC--GTCCCTCCGCCTCGTACTTTGTGTAG 111475
|| | ||| | || | | || ||| | || | ||||| | | |||
Sbjct 254140 AAGTTTTTGCGCT--TTCATGGTCTTTCTCCCACGCCCTTGTTTTTCGTATTCTTCGTAC 254197
Query 111476 AGGGCTTC--AAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC-CTTGTCTGGACAG 111532
| ||| |||||| |||||| | || | ||| ||| || ||| || ||
Sbjct 254198 AAT--TTCCTAAACTCATCACCCCAAACATCCTGCAATCCTC-TGCACTCGTCCGGGCAC 254254
Query 111533 AAAAGAGACCA---TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCAC 111589
| | | ||| |||| | ||| ||||||| || ||| || || || |||| |||
Sbjct 254255 ATCAAGGTCCAATCTTGATC--CTTT-TCAACCCTCTCCATAAATAGATCAGGAACCCAA 254311
Query 111590 AGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 111649
|||| | |||||| || | ||| | |||||| | || ||||| || | |||
Sbjct 254312 AGGGCAGGAAAGAGGTCACGACATCTCATCTCTTCCTTTCCGTGGTTTTTTCTAATTTCA 254371
Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGA 111709
| ||||| | | ||| |||||||| || | ||| | ||| |||| || || ||
Sbjct 254372 ATAAACTCTACAACGTCCAAATGCCATGGTTCCAAATAAATTGCAATAGCACCTTTACGT 254431
Query 111710 CGCCCAGC---TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 111766
|||| | ||||| | ||| | || || | ||| | ||||| |||||||||||
Sbjct 254432 TTCCCACCGCCTTGATCAATATACCTAGCAGTATCATTATAAACGCGCAGCATTGGAATT 254491
Query 111767 ATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGG 111826
| |||| || | ||||| || || |||||| || | | |||| | || |
Sbjct 254492 AGTCCATTAGACTTCCCATTGGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTT 254551
Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTT--TGAGATTTGCGCACACTCCGTAAGAGTTC 111884
| || ||||| ||| || || ||| | | |||||| ||| | || || ||
Sbjct 254552 ACTGCCACCCCAAGACCACCTGCAGTCTTGCTAATATTTGC--ACATTTAGTTAGCGTGT 254609
Query 111885 CATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG 111944
|| | |||||||| |||||||| || | || | |||||| ||||| || |
Sbjct 254610 CAAAAATACCGTTTATTGAGTCTTCTGGAATTCTGAGCAAAAAGCAAGATGACATTTGTG 254669
Query 111945 GTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG-GAC 112003
||| |||||| || | |||||| || || ||||| || || | || ||| || | |||
Sbjct 254670 GTCGTGGTGTTCCTGAATTGAAAAGTGTAGGTGTAGCATGTGTAAA-ATATTTTTGCGAC 254728
Query 112004 ATCTTGTCGTATGTCTCCAAGA-CAGAATCAATGTC 112038
|| |||||||||| ||||| ||| ||||| ||
Sbjct 254729 ATTAACTCGTATGTCT-CAAGAGCAGCTTCAATATC 254763
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628025303608800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |