Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq290 149 7e-31 >seq290 Length=478353 Score = 149 bits (164), Expect = 7e-31 Identities = 897/1412 (64%), Gaps = 46/1412 (3%) Strand=Plus/Minus Query 104214 TGGAAACCCCACAGTACATGTTC--ATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271 |||||| |||||| ||| ||| ||||| || | ||||| ||| | | || || Sbjct 254816 TGGAAAGACCACAG--CATCTTCTAATGCGAGTTTCTTGTGGTATACATTGTGGTGATAT 254759 Query 104272 TGATTCTG-TCTTGGAGACATACGACAAGATGTC-CCAAGGTATGTTCATTCACGCAACA 104329 ||| ||| ||||| |||||||||| ||||| | || ||| || | || || ||| Sbjct 254758 TGAAGCTGCTCTTG-AGACATACGAGTTAATGTCGCAAAAATAT-TTTACACATGCTACA 254701 Query 104330 CCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCC 104389 || || || |||||| | || |||||| |||| |||||||| |||||| | || Sbjct 254700 CCTACACTTTTCAATTCAGGAACACCACGACCACAAATGTCATCTTGCTTTTTGCTCAGA 254641 Query 104390 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 104449 | || |||||||| |||||||| | || || || || | ||| |||||| | | Sbjct 254640 ATTCCAGAAGACTCAATAAACGGTATTTTTGACACGCTAACTAAATGT--GCAAATATTA 254583 Query 104450 --AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA 104507 ||| || || ||| ||||| || | | || | |||| | | || || Sbjct 254582 GCAAGACTGCAGGTGGTCTTGGGGTGGCAGTAAGTAATATTAGAGGAACTGGTTCATATA 254523 Query 104508 TTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 104567 |||| || || ||||| | || |||| | ||||||||||| ||||| | ||| | | Sbjct 254522 TTCGAGGAACCAATGGGAAGTCTAATGGACTAATTCCAATGCTGCGCGTTTATAATGATA 254463 Query 104568 CAGCGCGCTATGTAAATCAA---GCTGGGCGTCGAAAGGGATCTATCGCAGTCTATCTTG 104624 | || | ||| | ||||| | |||| || || || |||| ||| | ||| | | Sbjct 254462 CTGCTAGGTATATTGATCAAGGCGGTGGGAAACGTAAAGGTGCTATTGCAATTTATTTGG 254403 Query 104625 AGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGG 104684 | |||||||| ||| | | ||||| |||| | | ||||| || | || | Sbjct 254402 AACCATGGCATTTGGACGTTGTAGAGTTTATTGAAATTAGAAAAAACCACGGAAAGGAAG 254343 Query 104685 AGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 104744 || | | || || || ||||| | || || ||| |||| ||||| || ||| |||| | Sbjct 254342 AGATGAGATGTCGTGACCTCTTTCCTGCCCTTTGGGTTCCTGATCTATTTATGGAGAGGG 254283 Query 104745 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAG-GCACCTGGTCTCTCCGAT 104803 |||| || | ||||| | | | || || ||| || ||| || | ||| Sbjct 254282 TTGAAAAGGATCAAGATTGGACCTTGATGTGCCCGGACGAGTGCA-GAGGATTGCAGGAT 254224 Query 104804 GCCGTGGGTGAGGAGTTTGAAGCCCTT-TACACAAAGTACGAGGAAGAAGGTCGGGCGAC 104862 | |||||| |||||| | | || ||| | | ||||| || |||| || | || Sbjct 254223 GTTTGGGGTGATGAGTTT-AGGAAATTGTACGAAGAATACGAAAAACAAGGGCGTGGGAG 254165 Query 104863 TGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGG 104922 ||| || ||| | | ||| || | || |||||| || || || Sbjct 254164 AAAGACCATGAAAGCGCAAAAACTTTGGTTTTTAATATTGCAGGCTCAAATTGAAACGGG 254105 Query 104923 TACACCATACATGCTTTACAAAGACGCCTGTAACCA-AAAGAGTAATCAAAAGAATTTGG 104981 || |||| || ||| || || | ||| || | || ||||| ||||||||||||| Sbjct 254104 AACGCCATTTATTTGTTATAAGGATG-CTGCAAATAGGAAAAGTAACCAAAAGAATTTGG 254046 Query 104982 G---TGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATG 105038 | | | || ||| || | || |||||||| |||||| || ||||| Sbjct 254045 GAACTATTGTCTCAAGT---AACTTATGCACAGAAATAATGGAATACACTAGTGGAGATG 253989 Query 105039 AGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA 105098 | | || || ||||| || ||||| |||| | || |||| || ||| ||| | | Sbjct 253988 AAATTGCAGTTTGTAATCTGGCATCTATCGGGTTACCGAAGTTCGTTGATAAAGATAACA 253929 Query 105099 AGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACA 105158 | |||||| ||| ||| || | | ||||||||||| | || | || |||| | Sbjct 253928 AAACATTTAATTTTGACAAGTTAAAGGAAGTTACGAAGGTGATTACGAGGAATTTAAATA 253869 Query 105159 GAGTTATTGA---TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGAC 105215 ||| |||| | | | | || ||| ||| || | || || ||| | |||| Sbjct 253868 AAGTAGTTGACTTTGGGTACTATT--CCCTCCCAGAATG-TAAAAATTCAAATCTAAGAC 253812 Query 105216 ACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGA-TG--TATTCATTCTTTGTCGCC 105272 | ||||| | || |||| || || || |||||||| || | | || ||| || | Sbjct 253811 ATCGTCCGTTGGGAATCGGCGTCCAAGGGCTCGCGGACTGCTTTATGATGCTTCGTATGC 253752 Query 105273 ACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATC 105332 | | ||| || || |||| || | | ||| || ||||| |||||| Sbjct 253751 ---CGTATGACTCAGATAAAGCTAAAAAGCTGAATAAAGAAATTTTTGAAGTTATGTATT 253695 Query 105333 ACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTG 105392 |||| ||||||||||| || | ||| | ||||| ||||| ||||| || | | | Sbjct 253694 ACGCAGCTCTTGAGGCTAGCTGTGAGCTTGCAGAAAAAGATGGGCCATACGAGTCATATT 253635 Query 105393 AGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC 105452 || || || || |||| | | |||||||||||||||| | || | ||| || Sbjct 253634 CTGGATCACCTGCGAGTAAAGGTATCTTGCAATTTGATATGTGGGGA-GTTACACC-AGA 253577 Query 105453 TT-----CACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAA 105507 || | | |||||||| | || || ||| | ||| || | || ||||||| Sbjct 253576 TTCTGGGCTTTGTGACTGGGATTCACTTAAAGAAAGAATCTCTAAGTATGGGATTCGTAA 253517 Query 105508 CAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 105567 |||| | || |||||||||| || ||||| || |||| || || ||||| ||||| Sbjct 253516 TTCTCTCTTAATATCTCCAATGCCTACTGCCTCTACTTCACAGATTTTAGGTAACAATGA 253457 Query 105568 ATGCTTTGAACCCTACACGACGAACATCTATC 105599 | ||||| |||| || | || || |||| Sbjct 253456 GAGTTTTGAGCCCTTTACTTCAAATATTTATC 253425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583254580981720