Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_028104.1
Length=73689
Score E
Sequences producing significant alignments: (Bits) Value
seq335 111 7e-20
>seq335
Length=109725
Score = 111 bits (122), Expect = 7e-20
Identities = 300/446 (67%), Gaps = 11/446 (2%)
Strand=Plus/Minus
Query 64884 TACTAAATCCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTG 64943
|||| | ||||| |||||||| | | ||||| | |||||||| ||||| |||||
Sbjct 4527 TACTCCAGCCTGTTCCAATACCGTCAGTACCATTCACCAAAATCATTGGAATTATTGGAA 4468
Query 64944 CATAAAAGATAGGCTCAACAATGAGACCATCATCATCCAAATACTTCAAAATGGCATCAT 65003
| ||| | | |||||||| | |||||||||| || || | || | | |||||
Sbjct 4467 CGTAATATAAAGGCTCAATTTGTTGTCCATCATCATATAAGTAAGTTAATAAAGGATCAT 4408
Query 65004 CCTCTTTTGGAAATATAGAACGAGTT-ATTTTATTCAATTGAGTATAAATATATCTTTCG 65062
| ||| ||| |||||| | | ||| ||||| | || |||| | ||||| | |
Sbjct 4407 CAGCTTCTGGGAATATATATCTAGTCCATTTTGATAGCTT-AGTAAATATATAACGAGCA 4349
Query 65063 GATGCGTGG-TCTTGTCCAGT-TCGT--CGTGTTCCAAACTGACCATTTGGCATTAATAA 65118
| || || |||| ||| || | | | ||||| |||||| || ||||||
Sbjct 4348 GC-GCTTGCATCTTTTCCGCCCTCCTTTCTACTACCAAATTGACCACAAGGTTCTAATAA 4290
Query 65119 ATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACT 65178
||||| |||||| |||| |||||| |||||||| | ||| | | | || ||
Sbjct 4289 ATTAAGATTGTTACTTCCAACAAAATTTTGAGCCATGTTTACAATAG-TACTTTGCAATG 4231
Query 65179 C-GCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTT 65237
| ||| ||||| || || | |||||||| ||||| ||| ||||| |||||||
Sbjct 4230 ATGATTCTCCGTGGTGGTAAGCGCTATGTTCAGCAACATAACCAGCTAATTGTGCAACTT 4171
Query 65238 TTATTTCCGTTGTTAAATT-CTTTTTAAATGCAGAATACAATATTTTCCGTAAACTAATT 65296
| | ||| || |||| || ||||||||||| | | | | || ||| | | | | |
Sbjct 4170 TAAGTTCA-TTATTAAGTTTCTTTTTAAATGTTGCAAAAAGTACTTTTCTTTGGCCAGGT 4112
Query 65297 TTCAATCCATCCATTAAATTAGGAAT 65322
|| |||||||||| |||||| |||||
Sbjct 4111 TTTAATCCATCCAATAAATTTGGAAT 4086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 235677549885450
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |