Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq335 111 7e-20 >seq335 Length=109725 Score = 111 bits (122), Expect = 7e-20 Identities = 300/446 (67%), Gaps = 11/446 (2%) Strand=Plus/Minus Query 64884 TACTAAATCCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTG 64943 |||| | ||||| |||||||| | | ||||| | |||||||| ||||| ||||| Sbjct 4527 TACTCCAGCCTGTTCCAATACCGTCAGTACCATTCACCAAAATCATTGGAATTATTGGAA 4468 Query 64944 CATAAAAGATAGGCTCAACAATGAGACCATCATCATCCAAATACTTCAAAATGGCATCAT 65003 | ||| | | |||||||| | |||||||||| || || | || | | ||||| Sbjct 4467 CGTAATATAAAGGCTCAATTTGTTGTCCATCATCATATAAGTAAGTTAATAAAGGATCAT 4408 Query 65004 CCTCTTTTGGAAATATAGAACGAGTT-ATTTTATTCAATTGAGTATAAATATATCTTTCG 65062 | ||| ||| |||||| | | ||| ||||| | || |||| | ||||| | | Sbjct 4407 CAGCTTCTGGGAATATATATCTAGTCCATTTTGATAGCTT-AGTAAATATATAACGAGCA 4349 Query 65063 GATGCGTGG-TCTTGTCCAGT-TCGT--CGTGTTCCAAACTGACCATTTGGCATTAATAA 65118 | || || |||| ||| || | | | ||||| |||||| || |||||| Sbjct 4348 GC-GCTTGCATCTTTTCCGCCCTCCTTTCTACTACCAAATTGACCACAAGGTTCTAATAA 4290 Query 65119 ATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACT 65178 ||||| |||||| |||| |||||| |||||||| | ||| | | | || || Sbjct 4289 ATTAAGATTGTTACTTCCAACAAAATTTTGAGCCATGTTTACAATAG-TACTTTGCAATG 4231 Query 65179 C-GCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTT 65237 | ||| ||||| || || | |||||||| ||||| ||| ||||| ||||||| Sbjct 4230 ATGATTCTCCGTGGTGGTAAGCGCTATGTTCAGCAACATAACCAGCTAATTGTGCAACTT 4171 Query 65238 TTATTTCCGTTGTTAAATT-CTTTTTAAATGCAGAATACAATATTTTCCGTAAACTAATT 65296 | | ||| || |||| || ||||||||||| | | | | || ||| | | | | | Sbjct 4170 TAAGTTCA-TTATTAAGTTTCTTTTTAAATGTTGCAAAAAGTACTTTTCTTTGGCCAGGT 4112 Query 65297 TTCAATCCATCCATTAAATTAGGAAT 65322 || |||||||||| |||||| ||||| Sbjct 4111 TTTAATCCATCCAATAAATTTGGAAT 4086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235677549885450