Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq290 111 2e-19 seq223 87.8 2e-12 >seq290 Length=478353 Score = 111 bits (122), Expect = 2e-19 Identities = 174/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 19424 CCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGC 19483 |||||||| ||||| | || | || || ||||| | | || || || || ||||| Sbjct 254487 CCAATGCTGCGCGTTTATAATGATACTGCTAGGTATATTGATCAAGGCGGTGGGAAACGT 254428 Query 19484 AAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAA 19543 || || | | || || || | || |||||||| |||||| | || || | ||| Sbjct 254427 AAAGGTGCTATTGCAATTTATTTGGAACCATGGCATTTGGACGTTGTAGAGTTTATTGAA 254368 Query 19544 CTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGG 19603 | | ||||| || | || |||||| | ||||| |||||||| | ||| | ||| Sbjct 254367 ATTAGAAAAAACCACGGAAAGGAAGAGATGAGATGTCGTGACCTCTTTCCTGCCCTTTGG 254308 Query 19604 ATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCG 19663 |||| || ||||| ||||||| |||||| ||||| |||| ||| | ||||||||||| Sbjct 254307 GTTCCTGATCTATTTATGGAGAGGGTTGAAAAGGATCAAGATTGGACCTTGATGTGCCCG 254248 Query 19664 CACGAATGC 19672 |||| ||| Sbjct 254247 GACGAGTGC 254239 Score = 93.3 bits (102), Expect = 5e-14 Identities = 170/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 79332 GCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAG 79391 |||||||| ||||||||||| | ||| || | ||||| |||||| ||||||| || || Sbjct 254239 GCACTCGTCCGGGCACATCAAGGTCCAATCTTGATCCTTTTCAACCCTCTCCATAAATAG 254298 Query 79392 GTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTT 79451 || || | ||| ||||| | |||||||| || || | |||||| || | || ||||| Sbjct 254299 ATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGACATCTCATCTCTTCCTTTCCGTGGTT 254358 Query 79452 CAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAA 79511 | | || | ||| || | | ||| ||||| || |||| ||| || || | Sbjct 254359 TTTTCTAATTTCAATAAACTCTACAACGTCCAAATGCCATGGTTCCAAATAAATTGCAAT 254418 Query 79512 CGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCG 79571 | ||| || || || || ||||| || | | |||| || || | || |||| || Sbjct 254419 AGCACCTTTACGTTTCCCACCGCCTTGATCAATATACCTAGCAGTATCATTATAAACGCG 254478 Query 79572 GAGCATGGG 79580 ||||| || Sbjct 254479 CAGCATTGG 254487 >seq223 Length=111419 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 59919 GCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCATTTGCA 59978 ||||||||| |||| ||||| ||||| | | ||||||| | || ||| ||||| Sbjct 59359 GCAGTTAAAAAAAAGGCAGAGTGGGCAACTAAATGGATGAATTGTGATAGATCTTTTGCT 59300 Query 59979 CAACGTCTCATAGCTTT-TGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG 60036 | | | || | || || ||| || ||||||||||| || ||||| || |||| Sbjct 59299 GAGAGAATTATTGGATTCTG--TGCAGTTGAAGGAATCTTATTTTCTGGTAGCTTTTGTG 59242 Query 60037 CTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGA 60096 ||||||| ||||| ||||| ||||| || ||||| || || | || || ||||| || | Sbjct 59241 CTATTTTTTGGCTTAAAAAACGTGGACTTATGCCTGGACTCACCTTTTCAAACGAACTTA 59182 Query 60097 TTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 | ||| || || || || ||| || ||||| Sbjct 59181 TCAGCCGTGATGAAGGACTACATGCTGATTTTGC 59148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548518951354320