Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq290 98.7 1e-15
seq223 82.4 8e-11
>seq290
Length=478353
Score = 98.7 bits (108), Expect = 1e-15
Identities = 198/294 (67%), Gaps = 0/294 (0%)
Strand=Plus/Minus
Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549
||||| | | || ||||| ||||| | || | || || |||| | | || || |
Sbjct 254498 ATGGACTAATTCCAATGCTGCGCGTTTATAATGATACTGCTAGGTATATTGATCAAGGCG 254439
Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609
||||||| || || || | | || || || | || || ||||| ||| || | |
Sbjct 254438 GTGGGAAACGTAAAGGTGCTATTGCAATTTATTTGGAACCATGGCATTTGGACGTTGTAG 254379
Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTA 53669
||||| | || | | || || || | ||||||||| | || |||||||| |||
Sbjct 254378 AGTTTATTGAAATTAGAAAAAACCACGGAAAGGAAGAGATGAGATGTCGTGACCTCTTTC 254319
Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729
| || || ||| |||| || || || ||| | | ||| || ||||| | || ||| |
Sbjct 254318 CTGCCCTTTGGGTTCCTGATCTATTTATGGAGAGGGTTGAAAAGGATCAAGATTGGACCT 254259
Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTA 53783
||||||||||| |||||||| || | |||| ||| | ||||| |||||||
Sbjct 254258 TGATGTGCCCGGACGAGTGCAGAGGATTGCAGGATGTTTGGGGTGATGAGTTTA 254205
>seq223
Length=111419
Score = 82.4 bits (90), Expect = 8e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828
|||||||| | ||| || | ||| || ||||| | || ||||||||||||||||| ||
Sbjct 59166 CCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGGCATAAGTCCACGTTTT 59225
Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGAC 74878
|| | |||||| || ||||| ||| |||| || ||||| ||||| ||
Sbjct 59226 TTAAGCCAAAAAATAGCACAAAAGCTACCAGAAAATAAGATTCCTTCAAC 59275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547210165309400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |