Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq290 98.7 1e-15 seq223 82.4 8e-11 >seq290 Length=478353 Score = 98.7 bits (108), Expect = 1e-15 Identities = 198/294 (67%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 ||||| | | || ||||| ||||| | || | || || |||| | | || || | Sbjct 254498 ATGGACTAATTCCAATGCTGCGCGTTTATAATGATACTGCTAGGTATATTGATCAAGGCG 254439 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 ||||||| || || || | | || || || | || || ||||| ||| || | | Sbjct 254438 GTGGGAAACGTAAAGGTGCTATTGCAATTTATTTGGAACCATGGCATTTGGACGTTGTAG 254379 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTA 53669 ||||| | || | | || || || | ||||||||| | || |||||||| ||| Sbjct 254378 AGTTTATTGAAATTAGAAAAAACCACGGAAAGGAAGAGATGAGATGTCGTGACCTCTTTC 254319 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 | || || ||| |||| || || || ||| | | ||| || ||||| | || ||| | Sbjct 254318 CTGCCCTTTGGGTTCCTGATCTATTTATGGAGAGGGTTGAAAAGGATCAAGATTGGACCT 254259 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTA 53783 ||||||||||| |||||||| || | |||| ||| | ||||| ||||||| Sbjct 254258 TGATGTGCCCGGACGAGTGCAGAGGATTGCAGGATGTTTGGGGTGATGAGTTTA 254205 >seq223 Length=111419 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 |||||||| | ||| || | ||| || ||||| | || ||||||||||||||||| || Sbjct 59166 CCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGGCATAAGTCCACGTTTT 59225 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGAC 74878 || | |||||| || ||||| ||| |||| || ||||| ||||| || Sbjct 59226 TTAAGCCAAAAAATAGCACAAAAGCTACCAGAAAATAAGATTCCTTCAAC 59275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547210165309400