Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq849 134 2e-26
>seq849
Length=33325
Score = 134 bits (148), Expect = 2e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| || || | || || |||||||| || | || || ||| |
Sbjct 19623 ATGCAGATTTTTGTTAAAACTTTGACAGGAAAGACTATCACATTGGAAGTAGAGCCTTCA 19564
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| ||| | || || || ||||| |||||||| |||||||| || |||||
Sbjct 19563 GATACAATTGAGAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCACCCGACCAA 19504
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || || || || |||||||| ||||||| | || ||| | || || |||
Sbjct 19503 CAACGTTTGATCTTCGCAGGAAAGCAACTAGAGGATGGAAGAACTCTATCTGATTACAAT 19444
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||||||||||||||| | || |||||||| | || | |||||
Sbjct 19443 ATCCAAAAGGAATCCACTTTACACTTAGTCTTGAGGCTCAGAGGTGG 19397
Score = 113 bits (124), Expect = 5e-20
Identities = 169/240 (70%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 27393 AAATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGA 27452
||| | ||| | ||||| || ||||| ||||| | || || |||||||| || | ||
Sbjct 19864 AAAGAATACAAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACATTGGA 19805
Query 27453 GGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAAT 27512
|| ||| | |||| |||| ||| | || || || ||||| || ||||| |||||
Sbjct 19804 AGTAGAGCCTTCAGATACAATTGAGAATGTTAAAGCAAAGATTCAAGATAAGGAAGGAAT 19745
Query 27513 TCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT 27572
||| || || || || ||| | || ||||| || || ||| | ||||| | | || ||
Sbjct 19744 TCCACCTGATCAACAACGTTTGATCTTTGCGGGGAAACAATTAGAGGACGGAAGAACTCT 19685
Query 27573 AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || || ||| ||||||||||||||||| | ||| | || ||| | || | |||||
Sbjct 19684 CTCTGATTACAATATCCAAAAGGAATCCACTTTACATTTGGTATTGAGACTCAGAGGTGG 19625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570304319065360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |