Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq849 134 2e-26 >seq849 Length=33325 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || | || || |||||||| || | || || ||| | Sbjct 19623 ATGCAGATTTTTGTTAAAACTTTGACAGGAAAGACTATCACATTGGAAGTAGAGCCTTCA 19564 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | || || || ||||| |||||||| |||||||| || ||||| Sbjct 19563 GATACAATTGAGAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCACCCGACCAA 19504 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || || || || |||||||| ||||||| | || ||| | || || ||| Sbjct 19503 CAACGTTTGATCTTCGCAGGAAAGCAACTAGAGGATGGAAGAACTCTATCTGATTACAAT 19444 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||||||| | || |||||||| | || | ||||| Sbjct 19443 ATCCAAAAGGAATCCACTTTACACTTAGTCTTGAGGCTCAGAGGTGG 19397 Score = 113 bits (124), Expect = 5e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 27393 AAATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGA 27452 ||| | ||| | ||||| || ||||| ||||| | || || |||||||| || | || Sbjct 19864 AAAGAATACAAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACATTGGA 19805 Query 27453 GGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAAT 27512 || ||| | |||| |||| ||| | || || || ||||| || ||||| ||||| Sbjct 19804 AGTAGAGCCTTCAGATACAATTGAGAATGTTAAAGCAAAGATTCAAGATAAGGAAGGAAT 19745 Query 27513 TCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT 27572 ||| || || || || ||| | || ||||| || || ||| | ||||| | | || || Sbjct 19744 TCCACCTGATCAACAACGTTTGATCTTTGCGGGGAAACAATTAGAGGACGGAAGAACTCT 19685 Query 27573 AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || ||| ||||||||||||||||| | ||| | || ||| | || | ||||| Sbjct 19684 CTCTGATTACAATATCCAAAAGGAATCCACTTTACATTTGGTATTGAGACTCAGAGGTGG 19625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570304319065360