Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq445 147 2e-30
seq849 145 7e-30
>seq445
Length=134117
Score = 147 bits (162), Expect = 2e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || |||||||||||| | || || ||| | || || | ||||| || || |||
Sbjct 79220 ATGCAAATTTTTGTAAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAGCCTTCC 79279
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| || || ||| || || |||||||| ||||| ||||| ||||||
Sbjct 79280 GACACCATTGAGAATGTTAAGGCAAAGATCCAGGACAAAGAGGGCATTCCACCTGATCAA 79339
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | || || || ||||||||||| | || | || || |||||
Sbjct 79340 CAGCGTCTGATCTTTGCAGGAAAGCAATTGGAAGATGGCAGAACTTTATCTGACTACAAT 79399
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196
||||| |||||||| ||||||||||||||
Sbjct 79400 ATTCAGAAGGAGTCTACCTTACATTTGGT 79428
>seq849
Length=33325
Score = 145 bits (160), Expect = 7e-30
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| |||||| |||| || ||| |||| || | ||||| || || ||
Sbjct 19395 ATGCAGATTTTTGTTAAAACTTTGACGGGAAAGACTATAACATTGGAAGTAGAGCCTTCA 19336
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || |||| || ||| ||| ||||||||||| ||||| || |||||||| |||
Sbjct 19335 GATACAATCGAGAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCACCCGACCAA 19276
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| ||||| || | || || |||||||| || ||| | || | || ||||||||
Sbjct 19275 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGACGGAAGAACTCTCTCTGATTACAAT 19216
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200
|| ||||| || || || ||||||||||| |||
Sbjct 19215 ATCCAAAAAGAATCCACTTTACATTTGGTATTG 19183
Score = 145 bits (160), Expect = 7e-30
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||| |||| || ||| |||| || | ||||| || || ||
Sbjct 19851 ATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACATTGGAAGTAGAGCCTTCA 19792
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||||| || ||| ||| |||||||| || ||||| || ||||| ||||||
Sbjct 19791 GATACAATTGAGAATGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCACCTGATCAA 19732
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| ||||| || | || || |||||||| || ||| | || | || ||||||||
Sbjct 19731 CAACGTTTGATCTTTGCGGGGAAACAATTAGAGGACGGAAGAACTCTCTCTGATTACAAT 19672
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200
|| |||||||| || || ||||||||||| |||
Sbjct 19671 ATCCAAAAGGAATCCACTTTACATTTGGTATTG 19639
Score = 136 bits (150), Expect = 3e-27
Identities = 158/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| |||||| |||| || ||| |||| || | ||||| || || ||
Sbjct 19623 ATGCAGATTTTTGTTAAAACTTTGACAGGAAAGACTATCACATTGGAAGTAGAGCCTTCA 19564
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||||| || ||| ||| ||||||||||| ||||| || |||||||| |||
Sbjct 19563 GATACAATTGAGAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCACCCGACCAA 19504
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| ||||| || | ||| || || ||| | || || | || | || ||||||||
Sbjct 19503 CAACGTTTGATCTTCGCAGGAAAGCAACTAGAGGATGGAAGAACTCTATCTGATTACAAT 19444
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200
|| |||||||| || || ||||| || || |||
Sbjct 19443 ATCCAAAAGGAATCCACTTTACACTTAGTCTTG 19411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434913762682560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |