Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq445 147 2e-30 seq849 145 7e-30 >seq445 Length=134117 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||||||| | || || ||| | || || | ||||| || || ||| Sbjct 79220 ATGCAAATTTTTGTAAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAGCCTTCC 79279 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || ||| || || |||||||| ||||| ||||| |||||| Sbjct 79280 GACACCATTGAGAATGTTAAGGCAAAGATCCAGGACAAAGAGGGCATTCCACCTGATCAA 79339 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || ||||||||||| | || | || || ||||| Sbjct 79340 CAGCGTCTGATCTTTGCAGGAAAGCAATTGGAAGATGGCAGAACTTTATCTGACTACAAT 79399 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| |||||||| |||||||||||||| Sbjct 79400 ATTCAGAAGGAGTCTACCTTACATTTGGT 79428 >seq849 Length=33325 Score = 145 bits (160), Expect = 7e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| |||| || ||| |||| || | ||||| || || || Sbjct 19395 ATGCAGATTTTTGTTAAAACTTTGACGGGAAAGACTATAACATTGGAAGTAGAGCCTTCA 19336 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| ||| ||||||||||| ||||| || |||||||| ||| Sbjct 19335 GATACAATCGAGAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCACCCGACCAA 19276 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||| || ||| | || | || |||||||| Sbjct 19275 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGACGGAAGAACTCTCTCTGATTACAAT 19216 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || ||||| || || || ||||||||||| ||| Sbjct 19215 ATCCAAAAAGAATCCACTTTACATTTGGTATTG 19183 Score = 145 bits (160), Expect = 7e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| || ||| |||| || | ||||| || || || Sbjct 19851 ATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACATTGGAAGTAGAGCCTTCA 19792 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| ||| |||||||| || ||||| || ||||| |||||| Sbjct 19791 GATACAATTGAGAATGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCACCTGATCAA 19732 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||| || ||| | || | || |||||||| Sbjct 19731 CAACGTTTGATCTTTGCGGGGAAACAATTAGAGGACGGAAGAACTCTCTCTGATTACAAT 19672 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || |||||||| || || ||||||||||| ||| Sbjct 19671 ATCCAAAAGGAATCCACTTTACATTTGGTATTG 19639 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| |||| || ||| |||| || | ||||| || || || Sbjct 19623 ATGCAGATTTTTGTTAAAACTTTGACAGGAAAGACTATCACATTGGAAGTAGAGCCTTCA 19564 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| ||| ||||||||||| ||||| || |||||||| ||| Sbjct 19563 GATACAATTGAGAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCACCCGACCAA 19504 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || || ||| | || || | || | || |||||||| Sbjct 19503 CAACGTTTGATCTTCGCAGGAAAGCAACTAGAGGATGGAAGAACTCTATCTGATTACAAT 19444 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || |||||||| || || ||||| || || ||| Sbjct 19443 ATCCAAAAGGAATCCACTTTACACTTAGTCTTG 19411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434913762682560