Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq849 91.5 1e-13 >seq849 Length=33325 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| |||||| | || || || ||| ||| | || || || | Sbjct 19395 ATGCAGATTTTTGTTAAAACTTTGACGGGAAAGACTATAACATTGGAAGTAGAGCCTTCA 19336 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||||| || ||| ||| || ||||| ||||| |||| | Sbjct 19335 GA-----TACAATCGAGAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCACCCG 19281 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| || || ||||| ||||||||||| || |||| | | | | || |||| Sbjct 19280 ACCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGACGGAAGAACTCTCTCTGATT 19221 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||||||||| |||||| |||||||| ||| Sbjct 19220 ACAATATCCAAAAAGAATCCACTTTACATTTGGTATTG 19183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355858700476731