Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq849 150 4e-31 seq445 131 4e-25 >seq849 Length=33325 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 || || | ||| | ||| | |||||| || |||||||| || ||||| | || || ||| Sbjct 19406 AGCCTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCAGATAGAGTTCTT 19465 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| || || ||||| ||||||||||| | ||||||||||| || |||| ||||||| Sbjct 19466 CCATCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCC 19525 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || |||||| ||| || || || || || || || || || || | ||| Sbjct 19526 TTGTCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTG 19585 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| || | ||| || ||||| | |||||| Sbjct 19586 ATAGTCTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | || | || | |||||| ||||||||||| || ||||| | || || || Sbjct 19177 AAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAGAGAGAGTTCT 19236 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||| || || | || || ||||| ||||| | ||||||||||| || |||| |||||| Sbjct 19237 TCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTC 19296 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 |||||| || |||||| ||| || || ||||| || || || || || || | || Sbjct 19297 CTTGTCTTGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCTACTTCCAATGT 19356 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||||||||| | ||| || ||||| | |||||| Sbjct 19357 TATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395 >seq445 Length=134117 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| || || | || | || ||||| || || || || || || | | || || Sbjct 79438 AAGTCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGATAAAGTTCT 79379 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||||| ||||| ||||| ||||| || || ||||| ||||| |||| || || Sbjct 79378 GCCATCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGGAATGCCCTC 79319 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||||||||||||| || || || || |||||||| || ||||| || | || Sbjct 79318 TTTGTCCTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGCTCAACTTCCAATGT 79259 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| |||||||| || | ||| |||||||| | ||||| || Sbjct 79258 GATGGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCATCTT 79217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159139331555345