Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq849 93.3 4e-14 >seq849 Length=33325 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || |||||||||| ||| |||||||| ||||| ||||| | || |||| | |||| Sbjct 19184 AATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCGTCC 19243 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || | ||||| || ||||| || | ||| || ||||||| || | | || ||||| Sbjct 19244 TCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCT 19303 Query 39193 ATGATTTTCTGTTTGAGCGT-CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 ||| | | || || | | | | | | ||||| | ||| || |||| || ||| | Sbjct 19304 -TGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCTACTTCCAATGTTATAGT 19362 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||||| ||||||||||| || ||||| Sbjct 19363 CTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429541134470789