Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq849 172 1e-37
>seq849
Length=33325
Score = 172 bits (190), Expect = 1e-37
Identities = 160/203 (79%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555
|| |||| ||| | ||| | ||||||||| ||||||| ||||||||| | | ||||||
Sbjct 19406 AGCCTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCAGATAGAGTTCTT 19465
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
||||| ||||| ||||| || |||||||| | |||||||||||||| ||||| ||||||
Sbjct 19466 CCATCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCC 19525
Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675
|||||||| |||||| || ||| || || || ||||| | || || || || |||
Sbjct 19526 TTGTCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTG 19585
Query 225676 ATCGTCTTGCCCGTCAAAGTTTT 225698
|| ||||| || |||||||||||
Sbjct 19586 ATAGTCTTTCCTGTCAAAGTTTT 19608
Score = 161 bits (178), Expect = 2e-34
Identities = 158/204 (77%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554
|||||||| || | || | ||||||||||||||||| ||||||||| | | ||||||
Sbjct 19177 AAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAGAGAGAGTTCT 19236
Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614
|| || |||| || || || || ||||| | |||||||||||||| ||||| |||||
Sbjct 19237 TCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTC 19296
Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674
||||||||| |||||| || ||| ||||| || ||||| | || || || || ||
Sbjct 19297 CTTGTCTTGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCTACTTCCAATGT 19356
Query 225675 GATCGTCTTGCCCGTCAAAGTTTT 225698
|| ||||| ||||||||||||||
Sbjct 19357 TATAGTCTTTCCCGTCAAAGTTTT 19380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192518166751982
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |