Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq849 105 5e-18 >seq849 Length=33325 Score = 105 bits (116), Expect = 5e-18 Identities = 169/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 100999 GTTATTACTATTGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAAT 101058 ||| |||| ||| || |||| | ||| || |||| || ||||| ||||||||||| || Sbjct 19158 GTTTTTAC-ATT-CCACCTCTAAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGAT 19215 Query 101059 ATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTG 101118 ||||||||| | | |||| | || || |||||||| || ||| | || | | ||| Sbjct 19216 ATTGTAATCAGAGAGAGTTCTTCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTG 19275 Query 101119 TTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTC 101178 |||||| || | ||||| ||||| ||| ||| ||| |||| | | || || Sbjct 19276 TTGGTCGGGTGGAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCGATTGTATC 19335 Query 101179 TGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || | | | ||| | || ||||| || |||||||| ||||||| |||||| ||||| Sbjct 19336 TGAAGGCTCTACTTCCAATGTTATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| | ||| || |||| || ||||| ||||| ||||| ||||||||||| | Sbjct 19625 CCACCTCTGAGTCTCAATACCAAATGTAAAGTGGATTCCTTTTGGATATTGTAATCAGAG 19684 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | |||| | || || |||||||| |||||| | || | | |||||| || || Sbjct 19685 AGAGTTCTTCCGTCCTCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGGTGGA 19744 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT 101191 | ||||| || || ||| ||| ||| |||| | | || |||| | | | | Sbjct 19745 ATTCCTTCCTTATCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACT 19804 Query 101192 TCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || | || ||||| || || ||||| || |||| |||||| ||||| Sbjct 19805 TCCAATGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 19851 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAA 101083 || || || | ||| ||||| ||||| ||||| ||||||||||| | | |||| | | Sbjct 19409 CTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCAGATAGAGTTCTTCCA 19468 Query 101084 TCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTG 101143 || || | ||| || || || | || | | ||||||||| || | ||||| ||| Sbjct 19469 TCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTG 19528 Query 101144 TCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATA 101203 || ||| ||| ||| |||| | | || |||| | | | ||| | || ||| Sbjct 19529 TCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTGATA 19588 Query 101204 GTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || || || ||||| ||||||| |||||| ||||| Sbjct 19589 GTCTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409656541191927