Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq223 228 7e-55 >seq223 Length=111419 Score = 228 bits (252), Expect = 7e-55 Identities = 579/861 (67%), Gaps = 31/861 (4%) Strand=Plus/Plus Query 4258 TTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTT 4317 |||||||||| |||| ||||||||||||||| ||||| |||| | |||||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 4318 CCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTT-TAGAGCTACAAGC 4376 |||| ||||||| ||||| || | || || | |||| || | || ||| | ||| Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATA-TATTTTGGGGACATCTAAAGCAAAAAGT 58973 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-A 4435 | || |||||||||||||| ||||| || ||| ||| | | || || ||||| | | Sbjct 58974 AGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGA 59033 Query 4436 TCTCACAGGTAGCGCGTATGTCAAA--AACTCTTGTTCTATAGTTACGGCTTCTGTGATT 4493 || ||||| || | || |||| || | | ||| | | || ||||||| ||| Sbjct 59034 TCA-ACAGGAAGAGA--ATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATG 59090 Query 4494 ATATCTTTTATTTTATCTTTAGATGGTTTA--TTTACTAAGTATCCAAACAATAAACACG 4551 || | || || | || | | | ||||| |||| | | | | | | ||| || | Sbjct 59091 ATTTGTTGTACTCTAGAAGTTGGTAGTTTAAATTTA--AGGGCTTTATAGATTAAGCAAG 59148 Query 4552 CAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGG 4611 |||||||| ||| | ||||| || | ||| || |||||||| ||||| || | ||| | Sbjct 59149 CAAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAG 59208 Query 4612 GCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGC 4671 |||| | || | |||||||||||||| ||||| ||| |||||||| || || | Sbjct 59209 GCATAAGTCCACGTTTTTTAAGCCAAAAAATAGCACAAAAGCTACCAGAAAATAAGATTC 59268 Query 4672 CTTCTACGGCGGCAAACGCTACTAA-TCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730 |||| || || || | | | ||| || | || || || | || ||| Sbjct 59269 CTTCAACTGC-ACAGAATCCAATAATTCTCTCAGCAAAAGATCT---ATCACAATTCATC 59324 Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTG-TATATAGCGTTAAA 4789 ||||| |||||| | || ||||| ||||| | ||| | || | || || | ||| Sbjct 59325 CATTTAGTTGCCCACTCTGCCTTTTTTTTAAC-TGCTGAAATATGAGAGATTGCTTCAAA 59383 Query 4790 TA--ATTT-ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 | |||| || || || || | || |||||| | || || |||| ||| | Sbjct 59384 AAGCATTTGACGTTCTTTAATT---TCAGTAATATATCTATCAATGAGTAATGAATATGT 59440 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906 ||| |||||| | ||| ||||| || ||||| | ||| | ||||||||||| || Sbjct 59441 CTCATTATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCTTCTGGTAT 59500 Query 4907 TTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGC 4966 ||| | ||| || ||| || | | |||||||| | || ||||| ||||| || || Sbjct 59501 TTGTATTTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGC 59560 Query 4967 AAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGG---CTTAAGTTTTTTCCA 5023 |||||| || | ||||| |||||| ||| ||||| ||||| ||| ||| Sbjct 59561 AAAAAAGGCTAGAACATATTTGATAAAG---TGTCTTTCAGGATCTTTAAGACTTTCCCA 59617 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083 | |||||| | ||||||||| ||||||| | |||||| || ||||| ||||| Sbjct 59618 ATCTCTGGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTT 59677 Query 5084 TTTGTACATAGACCAAATATC 5104 ||| ||||| ||||||||||| Sbjct 59678 TTTATACATTGACCAAATATC 59698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427045160419049