Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq290 322 7e-83
seq223 174 2e-38
>seq290
Length=478353
Score = 322 bits (356), Expect = 7e-83
Identities = 1158/1794 (65%), Gaps = 24/1794 (1%)
Strand=Plus/Plus
Query 76820 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTG-TCAGTT 76878
||| || || || ||||||| ||| |||| || || |||||||| || | | ||
Sbjct 253087 ATAATAAATGCCGGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATCGATGATAACTT 253146
Query 76879 TGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTC 76938
|| || | | | || | ||||||||||||| |||||| ||| | | | |
Sbjct 253147 TGCAA-AGTTGGCATTTTCCATATGAATATTCAAAGACTGAGATTGGCAAACATATGGAC 253205
Query 76939 CTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAA 76998
| ||||| || ||||| | || | |||||||| ||||||||||| ||| || |||
Sbjct 253206 CCCTATCTGCAGCCATATCAATCACCGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAA 253265
Query 76999 CTTGTTTGATATCATCTGGAAG-GTTTGTAT--TTTGAATGGAACCACCATCTGATATAA 77055
| ||||| ||||||| || |||| ||||||| ||| || || || |
Sbjct 253266 GCTCACGTATATCTTCTGGAATTGTAGGTATGTTTTGAATACTTCCATTATTTGCAATTA 253325
Query 77056 TTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAG 77115
| | | ||| | ||||| ||| ||| ||| ||| | | || | ||| |
Sbjct 253326 TATTTTGCTTAAGCCTATCATCCCATAATCCAAGTTCTAACAAATCATTTAGTAAATGTG 253385
Query 77116 GATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATG 77175
| || |||| ||||| ||||| | || |||||| |||||||| ||| | |
Sbjct 253386 GGTTCACTACAAAGAATTCACCAGATAGCACCCTACGATGATAAATATTTGAAGTAAAGG 253445
Query 77176 GTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCA 77235
| || | | |||||||| || ||||| || | |||||| ||||| ||||| || | |
Sbjct 253446 GCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAGAGGCAGTAGGCATTGGAGATA 253505
Query 77236 CCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCC 77295
|| | | ||| | | |||| | |||| | ||||| || | | ||| || |
Sbjct 253506 TTAAGAGAGAATTACGAATCCCATACTTAGAGATTCTTTCTTTAAGTGAATCCCAGTCAC 253565
Query 77296 AAAGATCTGAA---GGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCAT 77352
|||| | ||| ||| ||| |||| | ||| |||| | || || ||||| |||
Sbjct 253566 AAAGCCCAGAATCTGGTGTAACTCCCCACATATCAAATTGCAAGATACCTTTACTCGCAG 253625
Query 77353 ATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCA 77412
||||||| ||||| || || || || ||| |||| || || ||||| || || || |
Sbjct 253626 GTGATCCAGAATATGACTCGTATGGCCCATCTTTTTCTGCAAGCTCACAGCTAGCCTCAA 253685
Query 77413 ATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTAT 77472
||| ||||||| || ||| ||||| | ||||| || | || |||| | |
Sbjct 253686 GAGCTGCGTAATACATAACTTCAAAAATTTCTTTATTCAGCTTTTTAGCTTTATCTGAGT 253745
Query 77473 CAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAG 77532
|| |||| | | | | |||||| || || | || || || || || || | |
Sbjct 253746 CATACGGCATACGAAGCATCATAAAGCAGTCCGCGAGCCCTTGGACGCCGATTCCCAACG 253805
Query 77533 GTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAA 77592
| | |||||| ||| ||| ||||| |||||| | | ||| || || ||| | |
Sbjct 253806 GACGATGTCTTAGATTTGAATTTTTACATTCTGGGAGGGAATAGTACCCAAAGTCAACTA 253865
Query 77593 TTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATC 77652
|||||| | ||| || || || || || ||||||| || ||||| ||||
Sbjct 253866 CTTTATTTAAATTCCTCGTAATCACCTTCGTAACTTCCTTTAACTTGTCAAAATTAAATG 253925
Query 77653 TTCC---ATCTATAACAAACATGTTC---AAAGCTATAGATGCTAGATTACAAACTGCTA 77706
|| |||| || ||| | ||| || | |||||||| |||||||||||||| |
Sbjct 253926 TTTTGTTATCTTTATCAACGAACTTCGGTAACCCGATAGATGCCAGATTACAAACTGCAA 253985
Query 77707 CCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGC 77766
|||| | | | |||| ||||| || || |||| ||||| | ||||| |
Sbjct 253986 TTTCATCTCCACTAGTGTATTCCATTATTTCTGTGCATAAGTTACTTGAGACAATAGTTC 254045
Query 77767 CCAGATTTTGTTGGTTGCTCTTTTTA-TTGCATGAGTCCTTATAAAGAATAAACGGAGTC 77825
||| ||| | |||||| || || || ||||| | ||||||||| |||||| || ||
Sbjct 254046 CCAAATTCTTTTGGTTACTTTTCCTATTTGCA-GCATCCTTATAACAAATAAATGGCGTT 254104
Query 77826 CCGGTTTCAATCTGTG-ATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGA 77884
|| |||||||| || | | | ||| || | ||| | | ||||| || |
Sbjct 254105 CCCGTTTCAATTTGAGCCTGCAATATTA-AAAACCAAAGTTTTTGCGCTTTCATGGTCTT 254163
Query 77885 TTTGTATCGCCTCTCTCTTTCATAT--TGAGTATATAGCCGTTCAAATTCATCTCCCCAA 77942
| | |||| | | |||| ||| | ||| | | | ||| ||||| ||||||
Sbjct 254164 TCTCCCACGCCCTTGTTTTTCGTATTCTTCGTACAATTTCCT--AAACTCATCACCCCAA 254221
Query 77943 ACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTA 78002
||||| | |||||| ||| || | ||||||||||| | ||| || ||| | | |
Sbjct 254222 ACATCCTGCAATCCTCTGCACTCGTCCGGGCACATCAAGGTCCAATCTTGATCCTTTTCA 254281
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
|| | | |||||| |||||||| | ||| || ||| ||| || || || |||
Sbjct 254282 ACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGACATCTCATC 254341
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
||||| ||||| || ||| ||| || | |||||| | || || |||||||||||
Sbjct 254342 TCTTCCTTTCCGTGGTTTTTTCTAATTTCAATAAACTCTACAACGTCCAAATGCCATGGT 254401
Query 78123 TCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCG 78182
|| | ||| ||||| ||| | || ||||| ||| || ||||| ||||| || ||
Sbjct 254402 TCCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCGCCTTGATCAATATACCTAGCA 254461
Query 78183 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAA 78242
|| | ||||||||| | || ||||||||| | || ||||| | ||||| ||||| |
Sbjct 254462 GTATCATTATAAACGCGCAGCATTGGAATTAGTCCATTAGACTTCCCATTGGTTCCTCGA 254521
Query 78243 ATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTA 78302
||||| ||| || | | ||||||||| | | | ||| | || ||||| ||||
Sbjct 254522 ATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGACCACCTGCAGTCTT- 254580
Query 78303 GATATTA-GAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT 78361
| || || || || | | || || | ||||| | ||| ||| || ||
Sbjct 254581 GCTAATATTTGCACATTTAGTTAGCGTGTCAAAAATACCGTTTATTGAGTCTTCTGGAAT 254640
Query 78362 GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGG 78421
| || | ||| || |||||||| | | ||||||| ||| || | ||| ||
Sbjct 254641 TCTGAGCAAAAAGCAAGATGACATTTGTGGTCGTGGTGTTCCTGAATTGAAAAGTGTAGG 254700
Query 78422 AGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTAT 78481
| ||||| ||||| |||||| || | || | |||||| |||| ||| | ||| ||
Sbjct 254701 TGTAGCATGTGTAAAATATTTTTGCGACATTAACTCGTATGTCTCAAGAGCAGCTTCAAT 254760
Query 78482 GTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGT 78541
|| | ||| || || | || ||||| | | |||||| |||||||| ||
Sbjct 254761 ATCACCACAATGTATACCACAAGAAACTCGCATTAGAAGATGCTGTGGTCTTTCCACAAC 254820
Query 78542 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATA 78595
|| |||| ||| | | | || ||| |||| | ||| || || |||||||
Sbjct 254821 TTTGTTATCAATTCTGAGAAGATAGGATCTTTCTAGAGTCTTGAAGGCAAAATA 254874
>seq223
Length=111419
Score = 174 bits (192), Expect = 2e-38
Identities = 557/854 (65%), Gaps = 20/854 (2%)
Strand=Plus/Plus
Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910
|||| ||||| || || | || ||||| ||||| ||||| |||| | ||| ||| |
Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914
Query 47911 CCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCA 47970
|||| ||||||| ||||| ||||||| ||||| | |||| | ||| |
Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATCTAAAGCAAAAAGTA 58974
Query 47971 GTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTT 48030
||||||| || || ||||| |||||| ||| | | ||||||| || ||||| |
Sbjct 58975 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGAT 59034
Query 48031 TAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCG 48090
||| || |||| || ||| || | | ||| | | ||||| || || ||
Sbjct 59035 CAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGATT- 59093
Query 48091 ATGTTACCGTTTCCTC--ACTTGGTGGATACAACAAATG---TTTAAACATTAAACATGC 48145
|||| || || | ||||| | | || | | |||| | ||||| || ||
Sbjct 59094 -TGTT---GTACTCTAGAAGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAAGC 59149
Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205
||||||| ||| || |||||||| | || || | |||||| ||||| ||||| || ||
Sbjct 59150 AAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGG 59209
Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAATATGC 48264
||| |||||||||||||| |||||||| || | | | |||| | |||||||| || || |
Sbjct 59210 CATAAGTCCACGTTTTTTAAGCCAAAAAATAG-CACAAAAGCTACCAGAAAATAAGATTC 59268
Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACC 48324
|||| || || ||| | ||| |||||| | || || | |||||
Sbjct 59269 CTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTATCACAATTCATCCATT 59328
Query 48325 GTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 48384
|||||| || ||||| || || || | || || || | ||| || |
Sbjct 59329 TAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAAAAGCA 59388
Query 48385 AGtttttttCATTGCTATCTTTAACGTAAGTATCTATTA--AAAGACTATACATTTCGGA 48442
| ||| || | || ||| || |||| || | || || ||| | ||
Sbjct 59389 TTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGA--ATATGTCTCATT 59446
Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502
|| || | |||||| ||||| ||||| | ||| | ||| ||||||| || ||||
Sbjct 59447 ATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCTTCTGGTATTTGTAT 59506
Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562
|| || ||| | | ||||| || || | || || |||||||| |||||||||||
Sbjct 59507 TTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAAAAA 59566
Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGA--AGTCAGTTTATTCCAGTCATTG 48620
|||| |||| ||| ||||| | | |||| ||| | || | | ||| || ||
Sbjct 59567 GGCTAGAACATATTTGATAAAGTGTCTTTC--AGGATCTTTAAGACTTTCCCAATCTCTG 59624
Query 48621 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATAC 48680
||||| || ||| | |||||||| |||||||||||| || ||||||||||||
Sbjct 59625 GAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATAC 59684
Query 48681 ATATTCCATATATC 48694
|| ||| |||||
Sbjct 59685 ATTGACCAAATATC 59698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694661393093920
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