Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq290 322 7e-83 seq223 174 2e-38 >seq290 Length=478353 Score = 322 bits (356), Expect = 7e-83 Identities = 1158/1794 (65%), Gaps = 24/1794 (1%) Strand=Plus/Plus Query 76820 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTG-TCAGTT 76878 ||| || || || ||||||| ||| |||| || || |||||||| || | | || Sbjct 253087 ATAATAAATGCCGGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATCGATGATAACTT 253146 Query 76879 TGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTC 76938 || || | | | || | ||||||||||||| |||||| ||| | | | | Sbjct 253147 TGCAA-AGTTGGCATTTTCCATATGAATATTCAAAGACTGAGATTGGCAAACATATGGAC 253205 Query 76939 CTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAA 76998 | ||||| || ||||| | || | |||||||| ||||||||||| ||| || ||| Sbjct 253206 CCCTATCTGCAGCCATATCAATCACCGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAA 253265 Query 76999 CTTGTTTGATATCATCTGGAAG-GTTTGTAT--TTTGAATGGAACCACCATCTGATATAA 77055 | ||||| ||||||| || |||| ||||||| ||| || || || | Sbjct 253266 GCTCACGTATATCTTCTGGAATTGTAGGTATGTTTTGAATACTTCCATTATTTGCAATTA 253325 Query 77056 TTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAG 77115 | | | ||| | ||||| ||| ||| ||| ||| | | || | ||| | Sbjct 253326 TATTTTGCTTAAGCCTATCATCCCATAATCCAAGTTCTAACAAATCATTTAGTAAATGTG 253385 Query 77116 GATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATG 77175 | || |||| ||||| ||||| | || |||||| |||||||| ||| | | Sbjct 253386 GGTTCACTACAAAGAATTCACCAGATAGCACCCTACGATGATAAATATTTGAAGTAAAGG 253445 Query 77176 GTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCA 77235 | || | | |||||||| || ||||| || | |||||| ||||| ||||| || | | Sbjct 253446 GCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAGAGGCAGTAGGCATTGGAGATA 253505 Query 77236 CCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCC 77295 || | | ||| | | |||| | |||| | ||||| || | | ||| || | Sbjct 253506 TTAAGAGAGAATTACGAATCCCATACTTAGAGATTCTTTCTTTAAGTGAATCCCAGTCAC 253565 Query 77296 AAAGATCTGAA---GGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCAT 77352 |||| | ||| ||| ||| |||| | ||| |||| | || || ||||| ||| Sbjct 253566 AAAGCCCAGAATCTGGTGTAACTCCCCACATATCAAATTGCAAGATACCTTTACTCGCAG 253625 Query 77353 ATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCA 77412 ||||||| ||||| || || || || ||| |||| || || ||||| || || || | Sbjct 253626 GTGATCCAGAATATGACTCGTATGGCCCATCTTTTTCTGCAAGCTCACAGCTAGCCTCAA 253685 Query 77413 ATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTAT 77472 ||| ||||||| || ||| ||||| | ||||| || | || |||| | | Sbjct 253686 GAGCTGCGTAATACATAACTTCAAAAATTTCTTTATTCAGCTTTTTAGCTTTATCTGAGT 253745 Query 77473 CAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAG 77532 || |||| | | | | |||||| || || | || || || || || || | | Sbjct 253746 CATACGGCATACGAAGCATCATAAAGCAGTCCGCGAGCCCTTGGACGCCGATTCCCAACG 253805 Query 77533 GTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAA 77592 | | |||||| ||| ||| ||||| |||||| | | ||| || || ||| | | Sbjct 253806 GACGATGTCTTAGATTTGAATTTTTACATTCTGGGAGGGAATAGTACCCAAAGTCAACTA 253865 Query 77593 TTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATC 77652 |||||| | ||| || || || || || ||||||| || ||||| |||| Sbjct 253866 CTTTATTTAAATTCCTCGTAATCACCTTCGTAACTTCCTTTAACTTGTCAAAATTAAATG 253925 Query 77653 TTCC---ATCTATAACAAACATGTTC---AAAGCTATAGATGCTAGATTACAAACTGCTA 77706 || |||| || ||| | ||| || | |||||||| |||||||||||||| | Sbjct 253926 TTTTGTTATCTTTATCAACGAACTTCGGTAACCCGATAGATGCCAGATTACAAACTGCAA 253985 Query 77707 CCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGC 77766 |||| | | | |||| ||||| || || |||| ||||| | ||||| | Sbjct 253986 TTTCATCTCCACTAGTGTATTCCATTATTTCTGTGCATAAGTTACTTGAGACAATAGTTC 254045 Query 77767 CCAGATTTTGTTGGTTGCTCTTTTTA-TTGCATGAGTCCTTATAAAGAATAAACGGAGTC 77825 ||| ||| | |||||| || || || ||||| | ||||||||| |||||| || || Sbjct 254046 CCAAATTCTTTTGGTTACTTTTCCTATTTGCA-GCATCCTTATAACAAATAAATGGCGTT 254104 Query 77826 CCGGTTTCAATCTGTG-ATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGA 77884 || |||||||| || | | | ||| || | ||| | | ||||| || | Sbjct 254105 CCCGTTTCAATTTGAGCCTGCAATATTA-AAAACCAAAGTTTTTGCGCTTTCATGGTCTT 254163 Query 77885 TTTGTATCGCCTCTCTCTTTCATAT--TGAGTATATAGCCGTTCAAATTCATCTCCCCAA 77942 | | |||| | | |||| ||| | ||| | | | ||| ||||| |||||| Sbjct 254164 TCTCCCACGCCCTTGTTTTTCGTATTCTTCGTACAATTTCCT--AAACTCATCACCCCAA 254221 Query 77943 ACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTA 78002 ||||| | |||||| ||| || | ||||||||||| | ||| || ||| | | | Sbjct 254222 ACATCCTGCAATCCTCTGCACTCGTCCGGGCACATCAAGGTCCAATCTTGATCCTTTTCA 254281 Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 || | | |||||| |||||||| | ||| || ||| ||| || || || ||| Sbjct 254282 ACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGACATCTCATC 254341 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| ||||| || ||| ||| || | |||||| | || || ||||||||||| Sbjct 254342 TCTTCCTTTCCGTGGTTTTTTCTAATTTCAATAAACTCTACAACGTCCAAATGCCATGGT 254401 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCG 78182 || | ||| ||||| ||| | || ||||| ||| || ||||| ||||| || || Sbjct 254402 TCCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCGCCTTGATCAATATACCTAGCA 254461 Query 78183 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAA 78242 || | ||||||||| | || ||||||||| | || ||||| | ||||| ||||| | Sbjct 254462 GTATCATTATAAACGCGCAGCATTGGAATTAGTCCATTAGACTTCCCATTGGTTCCTCGA 254521 Query 78243 ATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTA 78302 ||||| ||| || | | ||||||||| | | | ||| | || ||||| |||| Sbjct 254522 ATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGACCACCTGCAGTCTT- 254580 Query 78303 GATATTA-GAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT 78361 | || || || || | | || || | ||||| | ||| ||| || || Sbjct 254581 GCTAATATTTGCACATTTAGTTAGCGTGTCAAAAATACCGTTTATTGAGTCTTCTGGAAT 254640 Query 78362 GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGG 78421 | || | ||| || |||||||| | | ||||||| ||| || | ||| || Sbjct 254641 TCTGAGCAAAAAGCAAGATGACATTTGTGGTCGTGGTGTTCCTGAATTGAAAAGTGTAGG 254700 Query 78422 AGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTAT 78481 | ||||| ||||| |||||| || | || | |||||| |||| ||| | ||| || Sbjct 254701 TGTAGCATGTGTAAAATATTTTTGCGACATTAACTCGTATGTCTCAAGAGCAGCTTCAAT 254760 Query 78482 GTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGT 78541 || | ||| || || | || ||||| | | |||||| |||||||| || Sbjct 254761 ATCACCACAATGTATACCACAAGAAACTCGCATTAGAAGATGCTGTGGTCTTTCCACAAC 254820 Query 78542 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATA 78595 || |||| ||| | | | || ||| |||| | ||| || || ||||||| Sbjct 254821 TTTGTTATCAATTCTGAGAAGATAGGATCTTTCTAGAGTCTTGAAGGCAAAATA 254874 >seq223 Length=111419 Score = 174 bits (192), Expect = 2e-38 Identities = 557/854 (65%), Gaps = 20/854 (2%) Strand=Plus/Plus Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 |||| ||||| || || | || ||||| ||||| ||||| |||| | ||| ||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 47911 CCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCA 47970 |||| ||||||| ||||| ||||||| ||||| | |||| | ||| | Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATCTAAAGCAAAAAGTA 58974 Query 47971 GTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTT 48030 ||||||| || || ||||| |||||| ||| | | ||||||| || ||||| | Sbjct 58975 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGAT 59034 Query 48031 TAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCG 48090 ||| || |||| || ||| || | | ||| | | ||||| || || || Sbjct 59035 CAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGATT- 59093 Query 48091 ATGTTACCGTTTCCTC--ACTTGGTGGATACAACAAATG---TTTAAACATTAAACATGC 48145 |||| || || | ||||| | | || | | |||| | ||||| || || Sbjct 59094 -TGTT---GTACTCTAGAAGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAAGC 59149 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 ||||||| ||| || |||||||| | || || | |||||| ||||| ||||| || || Sbjct 59150 AAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGG 59209 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAATATGC 48264 ||| |||||||||||||| |||||||| || | | | |||| | |||||||| || || | Sbjct 59210 CATAAGTCCACGTTTTTTAAGCCAAAAAATAG-CACAAAAGCTACCAGAAAATAAGATTC 59268 Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACC 48324 |||| || || ||| | ||| |||||| | || || | ||||| Sbjct 59269 CTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTATCACAATTCATCCATT 59328 Query 48325 GTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 48384 |||||| || ||||| || || || | || || || | ||| || | Sbjct 59329 TAGTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAAAAGCA 59388 Query 48385 AGtttttttCATTGCTATCTTTAACGTAAGTATCTATTA--AAAGACTATACATTTCGGA 48442 | ||| || | || ||| || |||| || | || || ||| | || Sbjct 59389 TTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGA--ATATGTCTCATT 59446 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 || || | |||||| ||||| ||||| | ||| | ||| ||||||| || |||| Sbjct 59447 ATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCTTCTGGTATTTGTAT 59506 Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 || || ||| | | ||||| || || | || || |||||||| ||||||||||| Sbjct 59507 TTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAAAAA 59566 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGA--AGTCAGTTTATTCCAGTCATTG 48620 |||| |||| ||| ||||| | | |||| ||| | || | | ||| || || Sbjct 59567 GGCTAGAACATATTTGATAAAGTGTCTTTC--AGGATCTTTAAGACTTTCCCAATCTCTG 59624 Query 48621 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATAC 48680 ||||| || ||| | |||||||| |||||||||||| || |||||||||||| Sbjct 59625 GAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATAC 59684 Query 48681 ATATTCCATATATC 48694 || ||| ||||| Sbjct 59685 ATTGACCAAATATC 59698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694661393093920