Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq290 277 3e-69
seq223 224 1e-53
>seq290
Length=478353
Score = 277 bits (306), Expect = 3e-69
Identities = 1194/1872 (64%), Gaps = 42/1872 (2%)
Strand=Plus/Plus
Query 75415 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTT 75474
||| || || || ||||||| ||| |||| || || |||||||| || || ||
Sbjct 253087 ATAATAAATGCCGGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATCGATGATAACTT 253146
Query 75475 GGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCC 75534
| | | | | || | ||||||||||||| |||||| ||| | | | ||
Sbjct 253147 TGCAAAGTTGGCATTTTCCATATGAATATTCAAAGACTGAGATTGGCAAACATATGGACC 253206
Query 75535 TCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAAC 75594
||||| || ||||| | || | |||||||| ||||||||||| ||| || |||
Sbjct 253207 CCTATCTGCAGCCATATCAATCACCGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 253266
Query 75595 TTGTTTGATATCATCTGGAAGATTTGTA------TTTTGAATGGATCCGCCATCAGATAT 75648
| ||||| ||||||| ||||| |||||||| ||| || | |
Sbjct 253267 CTCACGTATATCTTCTGGAA---TTGTAGGTATGTTTTGAATACTTCC---ATTATTTGC 253320
Query 75649 AATTGTATT---CTTGATCTCATCATTCCACAATT----TTCTCTCGGTTAAAACTCTAA 75701
|||| |||| ||| | | ||||| ||| ||| |||| | ||| | | |
Sbjct 253321 AATTATATTTTGCTTAAGCCTATCATCCCATAATCCAAGTTCTAAC----AAATCATTTA 253376
Query 75702 GGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTAC 75761
| | ||| || || || | ||||| ||||| | || || ||| ||||||||
Sbjct 253377 GTAAATGTGGGTTCACTACAAAGAATTCACCAGATAGCACCCTACGATGATAAATATTTG 253436
Query 75762 TGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCA 75821
||| | || || | | |||||||| || ||||| || | ||| || ||||| ||||
Sbjct 253437 AAGTAAAGGGCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAGAGGCAGTAGGCA 253496
Query 75822 TAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATT 75881
| || | | || | | ||| | | |||| | |||| | ||||| || | |
Sbjct 253497 TTGGAGATATTAAGAGAGAATTACGAATCCCATACTTAGAGATTCTTTCTTTAAGTGAAT 253556
Query 75882 TCCAATCCCAAAGATCTGA---TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGT 75938
||| || ||||| | || |||| ||| |||| | ||| |||| | || || |
Sbjct 253557 CCCAGTCACAAAGCCCAGAATCTGGTGTAACTCCCCACATATCAAATTGCAAGATACCTT 253616
Query 75939 TGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAAC 75998
| || ||| ||||||| ||||| ||||| | ||| || ||||| || || || || |
Sbjct 253617 TACTCGCAGGTGATCCAGAATATGACTCGTATGGCCCATCTTTTTCTGCAAGCTCACAGC 253676
Query 75999 TCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTT 76058
| ||||| | || ||||||| || ||| ||||| | ||||| || | || ||||
Sbjct 253677 TAGCCTCAAGAGCTGCGTAATACATAACTTCAAAAATTTCTTTATTCAGCTTTTTAGCTT 253736
Query 76059 CAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCA-TCTGCTAGTCCCTGAACTCCA 76117
| ||| | || | | | | ||||| ||| || || || || || || ||
Sbjct 253737 TATCTGAGTCATACGGCATACGAAGCATCATAAA-GCAGTCCGCGAGCCCTTGGACGCCG 253795
Query 76118 ATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTA 76177
|| || | || | |||||| ||| ||| ||| | |||||| | | || || |
Sbjct 253796 ATTCCCAACGGACGATGTCTTAGATTTGAATTTTTACATTCTGGGAGGGAATAGTACCCA 253855
Query 76178 ATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGA 76237
| || | | |||||| | ||| || || || || || ||||||| ||| |
Sbjct 253856 AAGTCAACTACTTTATTTAAATTCCTCGTAATCACCTTCGTAACTTCCTTTAACTTGTCA 253915
Query 76238 AAATCAAATTTTCC---ATCT--ATCA-CAAACATATTAAGAGCTATAGATGCTAGATTA 76291
|||| |||| || |||| |||| | ||| | | | |||||||| ||||||
Sbjct 253916 AAATTAAATGTTTTGTTATCTTTATCAACGAACTTCGGTAACCCGATAGATGCCAGATTA 253975
Query 76292 CAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACAC 76351
||||| || | |||| || | | |||| ||||| || ||||||| ||||| |
Sbjct 253976 CAAACTGCAATTTCATCTCCACTAGTGTATTCCATTATTTCTGTGCATAAGTTACTTGAG 254035
Query 76352 TTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACA 76411
|||||||| | ||| | |||||| || || | || | ||||||||| || |
Sbjct 254036 ACAATAGTTCCCAAATTCTTTTGGTTACTTTTCCTATTTGCAGCATCCTTATAACAAATA 254095
Query 76412 AACGGAGTTCCAGTTTCAATCTGTGATT-CGATAATAGATTTCCAGACGACTCTAGCTTT 76470
|| || ||||| |||||||| || | | | ||| || | ||| | | |||||
Sbjct 254096 AATGGCGTTCCCGTTTCAATTTGAGCCTGCAATATTAAAAA-CCAAAGTTTTTGCGCTTT 254154
Query 76471 TATTATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTC--AAATTCA 76528
|| | | | ||| | | |||| |||| | || || ||| ||| |||
Sbjct 254155 CATGGTCTTTCTCCCACGCCCTTGTTTTTCGTATTCTTCGTACAAT--TTCCTAAACTCA 254212
Query 76529 TCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCA 76588
|| ||||||||||| | ||| || || || | ||| |||||||| | ||| || |
Sbjct 254213 TCACCCCAAACATCCTGCAATCCTCTGCACTCGTCCGGGCACATCAAGGTCCAATCTTGA 254272
Query 76589 TCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGG 76648
|| | | ||||| | |||||| |||||||| | ||| || ||| ||| || || ||
Sbjct 254273 TCCTTTTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGA 254332
Query 76649 GTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAA 76708
||| ||||| ||||| || ||| ||| || | ||||| | || || ||
Sbjct 254333 CATCTCATCTCTTCCTTTCCGTGGTTTTTTCTAATTTCAATAAACTCTACAACGTCCAAA 254392
Query 76709 TGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATA 76768
||||||||||| | ||| || || ||| |||| ||||| ||| || ||||| |||
Sbjct 254393 TGCCATGGTTCCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCGCCTTGATCAATA 254452
Query 76769 TATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTT 76828
|| || ||||| | ||||||||| | || ||||||||| | || ||||| | |||||
Sbjct 254453 TACCTAGCAGTATCATTATAAACGCGCAGCATTGGAATTAGTCCATTAGACTTCCCATTG 254512
Query 76829 GTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCT 76888
||||| |||||| ||| | | | ||||||||| | | | || | || |||
Sbjct 254513 GTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGACCACCT 254572
Query 76889 GCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCA 76948
|| | || || ||||| | | |||||| | || || | ||| ||
Sbjct 254573 GCAGTCTTGCTAATATTTGCACATTTAGTTAGCGTGTCAAAAATACCGTTTATTGAGTCT 254632
Query 76949 TCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAAC 77008
|| || | || | ||| || |||||||| | | ||||||| ||| ||
Sbjct 254633 TCTGGAATTCTGAGCAAAAAGCAAGATGACATTTGTGGTCGTGGTGTTCCTGAATTGAAA 254692
Query 77009 AATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACT 77068
| |||||| | ||||| || || |||||| || | || | |||||| |||| | |
Sbjct 254693 AGTGTAGGTGTAGCATGTGTAAAATATTTTTGCGACATTAACTCGTATGTCTCAAGAGCA 254752
Query 77069 GCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGT 77128
||||| ||||| | ||| || || || || ||||| | | |||||| |||| |
Sbjct 254753 GCTTCAATATCACCACAATGTATACCACAAGAAACTCGCATTAGAAGATGCTGTGGTCTT 254812
Query 77129 TCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAA 77188
|| ||| || |||| ||| | | | || ||| |||| | ||| || || |||||
Sbjct 254813 TCCACAACTTTGTTATCAATTCTGAGAAGATAGGATCTTTCTAGAGTCTTGAAGGCAAAA 254872
Query 77189 TAGTTGTATGAAAAGTCTCTTTCGTAAAT-AATAACCGAATTTAGTTTGTCCTTATATTT 77247
|| | ||| || ||| ||| |||| ||| |||||| | | | || |||| ||
Sbjct 254873 TAATCATATTCGAAATCT-TTTGAAAAATCAATTTTCGAATTAATTCTTTCTTTATTTTC 254931
Query 77248 GGTAACAATATC 77259
||| || |||
Sbjct 254932 CATAATAAAATC 254943
>seq223
Length=111419
Score = 224 bits (248), Expect = 1e-53
Identities = 567/853 (66%), Gaps = 18/853 (2%)
Strand=Plus/Plus
Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399
|||||||||| || || | || ||||| ||||| ||||| |||| | ||| ||| |
Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914
Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459
|||| ||||||| ||||| || |||||||| ||||| | |||| | ||| |
Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATCTAAAGCAAAAAGTA 58974
Query 46460 GTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTT 46519
||||||| || || ||||| ||||| ||| | | ||||||| || || || |
Sbjct 58975 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGAT 59034
Query 46520 TGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCG 46579
|| || |||| || ||| || | | ||||| | ||||| || || || ||
Sbjct 59035 CAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGATTT 59094
Query 46580 ATGTTACTGTTTCCTCACTTGGTGGATGCA--TCAAATG-TTTAAACATTAAACATGCAA 46636
| |||| | | ||||| | | | | || | |||| | ||||| || ||||
Sbjct 59095 GTTGTACTCTAGA---AGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAAGCAA 59151
Query 46637 AATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCA 46696
||||| ||| || |||||||| | || || | |||||| ||||| ||||| |||||||
Sbjct 59152 AATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGGCA 59211
Query 46697 TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATATGCCT 46755
| |||||||| ||||| |||||||| ||||| | |||| | |||||||| || || |||
Sbjct 59212 TAAGTCCACGTTTTTTAAGCCAAAAAATAGCA-CAAAAGCTACCAGAAAATAAGATTCCT 59270
Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACCTT 46815
|| || || |||| | | || |||||| | || |||| || ||||| |
Sbjct 59271 TCAACTGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTATCACAATTCATCCATTTA 59330
Query 46816 TGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 46875
||||| || |||||||| || || | || || || | ||| || |
Sbjct 59331 GTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAAAAGCATT 59390
Query 46876 tttttttCATCACTATCTTTAACATATGTATCTATTA--AAAGACTATACATTTCTGAAT 46933
| ||| | | | || ||| |||| |||| || | || || ||| | || ||
Sbjct 59391 TGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGAATATG--TCTCATTAT 59448
Query 46934 GAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCT 46993
| || | |||||||||||| ||||| | ||| | ||| ||||| | || |||| |
Sbjct 59449 GTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCTTCTGGTATTTGTATTT 59508
Query 46994 CTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATG 47053
|| || ||| | | | ||| || || | || || |||||||| ||||||||||| |
Sbjct 59509 CTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAAAAAGG 59568
Query 47054 CCAATACATGTTTAATAAAATATTTTTC---ATCGGTAGTCAGTTTATTCCAGTCATTGA 47110
| | |||| ||| ||||| | | |||| ||| || || | | ||| || ||
Sbjct 59569 CTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTA---AGACTTTCCCAATCTCTGG 59625
Query 47111 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACA 47170
||||| || ||| | |||||||| ||| ||||| || || |||||||||||||
Sbjct 59626 AATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATACA 59685
Query 47171 TATTCCATATATC 47183
| ||| |||||
Sbjct 59686 TTGACCAAATATC 59698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712926798336960
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