Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq290 277 3e-69 seq223 224 1e-53 >seq290 Length=478353 Score = 277 bits (306), Expect = 3e-69 Identities = 1194/1872 (64%), Gaps = 42/1872 (2%) Strand=Plus/Plus Query 75415 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTT 75474 ||| || || || ||||||| ||| |||| || || |||||||| || || || Sbjct 253087 ATAATAAATGCCGGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATCGATGATAACTT 253146 Query 75475 GGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCC 75534 | | | | | || | ||||||||||||| |||||| ||| | | | || Sbjct 253147 TGCAAAGTTGGCATTTTCCATATGAATATTCAAAGACTGAGATTGGCAAACATATGGACC 253206 Query 75535 TCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAAC 75594 ||||| || ||||| | || | |||||||| ||||||||||| ||| || ||| Sbjct 253207 CCTATCTGCAGCCATATCAATCACCGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 253266 Query 75595 TTGTTTGATATCATCTGGAAGATTTGTA------TTTTGAATGGATCCGCCATCAGATAT 75648 | ||||| ||||||| ||||| |||||||| ||| || | | Sbjct 253267 CTCACGTATATCTTCTGGAA---TTGTAGGTATGTTTTGAATACTTCC---ATTATTTGC 253320 Query 75649 AATTGTATT---CTTGATCTCATCATTCCACAATT----TTCTCTCGGTTAAAACTCTAA 75701 |||| |||| ||| | | ||||| ||| ||| |||| | ||| | | | Sbjct 253321 AATTATATTTTGCTTAAGCCTATCATCCCATAATCCAAGTTCTAAC----AAATCATTTA 253376 Query 75702 GGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTAC 75761 | | ||| || || || | ||||| ||||| | || || ||| |||||||| Sbjct 253377 GTAAATGTGGGTTCACTACAAAGAATTCACCAGATAGCACCCTACGATGATAAATATTTG 253436 Query 75762 TGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCA 75821 ||| | || || | | |||||||| || ||||| || | ||| || ||||| |||| Sbjct 253437 AAGTAAAGGGCTCAAAACTCTCATTGTTACCTAAAATCTGTGAAGTAGAGGCAGTAGGCA 253496 Query 75822 TAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATT 75881 | || | | || | | ||| | | |||| | |||| | ||||| || | | Sbjct 253497 TTGGAGATATTAAGAGAGAATTACGAATCCCATACTTAGAGATTCTTTCTTTAAGTGAAT 253556 Query 75882 TCCAATCCCAAAGATCTGA---TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGT 75938 ||| || ||||| | || |||| ||| |||| | ||| |||| | || || | Sbjct 253557 CCCAGTCACAAAGCCCAGAATCTGGTGTAACTCCCCACATATCAAATTGCAAGATACCTT 253616 Query 75939 TGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAAC 75998 | || ||| ||||||| ||||| ||||| | ||| || ||||| || || || || | Sbjct 253617 TACTCGCAGGTGATCCAGAATATGACTCGTATGGCCCATCTTTTTCTGCAAGCTCACAGC 253676 Query 75999 TCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTT 76058 | ||||| | || ||||||| || ||| ||||| | ||||| || | || |||| Sbjct 253677 TAGCCTCAAGAGCTGCGTAATACATAACTTCAAAAATTTCTTTATTCAGCTTTTTAGCTT 253736 Query 76059 CAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCA-TCTGCTAGTCCCTGAACTCCA 76117 | ||| | || | | | | ||||| ||| || || || || || || || Sbjct 253737 TATCTGAGTCATACGGCATACGAAGCATCATAAA-GCAGTCCGCGAGCCCTTGGACGCCG 253795 Query 76118 ATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTA 76177 || || | || | |||||| ||| ||| ||| | |||||| | | || || | Sbjct 253796 ATTCCCAACGGACGATGTCTTAGATTTGAATTTTTACATTCTGGGAGGGAATAGTACCCA 253855 Query 76178 ATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGA 76237 | || | | |||||| | ||| || || || || || ||||||| ||| | Sbjct 253856 AAGTCAACTACTTTATTTAAATTCCTCGTAATCACCTTCGTAACTTCCTTTAACTTGTCA 253915 Query 76238 AAATCAAATTTTCC---ATCT--ATCA-CAAACATATTAAGAGCTATAGATGCTAGATTA 76291 |||| |||| || |||| |||| | ||| | | | |||||||| |||||| Sbjct 253916 AAATTAAATGTTTTGTTATCTTTATCAACGAACTTCGGTAACCCGATAGATGCCAGATTA 253975 Query 76292 CAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACAC 76351 ||||| || | |||| || | | |||| ||||| || ||||||| ||||| | Sbjct 253976 CAAACTGCAATTTCATCTCCACTAGTGTATTCCATTATTTCTGTGCATAAGTTACTTGAG 254035 Query 76352 TTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACA 76411 |||||||| | ||| | |||||| || || | || | ||||||||| || | Sbjct 254036 ACAATAGTTCCCAAATTCTTTTGGTTACTTTTCCTATTTGCAGCATCCTTATAACAAATA 254095 Query 76412 AACGGAGTTCCAGTTTCAATCTGTGATT-CGATAATAGATTTCCAGACGACTCTAGCTTT 76470 || || ||||| |||||||| || | | | ||| || | ||| | | ||||| Sbjct 254096 AATGGCGTTCCCGTTTCAATTTGAGCCTGCAATATTAAAAA-CCAAAGTTTTTGCGCTTT 254154 Query 76471 TATTATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTC--AAATTCA 76528 || | | | ||| | | |||| |||| | || || ||| ||| ||| Sbjct 254155 CATGGTCTTTCTCCCACGCCCTTGTTTTTCGTATTCTTCGTACAAT--TTCCTAAACTCA 254212 Query 76529 TCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCA 76588 || ||||||||||| | ||| || || || | ||| |||||||| | ||| || | Sbjct 254213 TCACCCCAAACATCCTGCAATCCTCTGCACTCGTCCGGGCACATCAAGGTCCAATCTTGA 254272 Query 76589 TCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGG 76648 || | | ||||| | |||||| |||||||| | ||| || ||| ||| || || || Sbjct 254273 TCCTTTTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGA 254332 Query 76649 GTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAA 76708 ||| ||||| ||||| || ||| ||| || | ||||| | || || || Sbjct 254333 CATCTCATCTCTTCCTTTCCGTGGTTTTTTCTAATTTCAATAAACTCTACAACGTCCAAA 254392 Query 76709 TGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATA 76768 ||||||||||| | ||| || || ||| |||| ||||| ||| || ||||| ||| Sbjct 254393 TGCCATGGTTCCAAATAAATTGCAATAGCACCTTTACGTTTCCCACCGCCTTGATCAATA 254452 Query 76769 TATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTT 76828 || || ||||| | ||||||||| | || ||||||||| | || ||||| | ||||| Sbjct 254453 TACCTAGCAGTATCATTATAAACGCGCAGCATTGGAATTAGTCCATTAGACTTCCCATTG 254512 Query 76829 GTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCT 76888 ||||| |||||| ||| | | | ||||||||| | | | || | || ||| Sbjct 254513 GTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGACCACCT 254572 Query 76889 GCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCA 76948 || | || || ||||| | | |||||| | || || | ||| || Sbjct 254573 GCAGTCTTGCTAATATTTGCACATTTAGTTAGCGTGTCAAAAATACCGTTTATTGAGTCT 254632 Query 76949 TCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAAC 77008 || || | || | ||| || |||||||| | | ||||||| ||| || Sbjct 254633 TCTGGAATTCTGAGCAAAAAGCAAGATGACATTTGTGGTCGTGGTGTTCCTGAATTGAAA 254692 Query 77009 AATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACT 77068 | |||||| | ||||| || || |||||| || | || | |||||| |||| | | Sbjct 254693 AGTGTAGGTGTAGCATGTGTAAAATATTTTTGCGACATTAACTCGTATGTCTCAAGAGCA 254752 Query 77069 GCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGT 77128 ||||| ||||| | ||| || || || || ||||| | | |||||| |||| | Sbjct 254753 GCTTCAATATCACCACAATGTATACCACAAGAAACTCGCATTAGAAGATGCTGTGGTCTT 254812 Query 77129 TCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAA 77188 || ||| || |||| ||| | | | || ||| |||| | ||| || || ||||| Sbjct 254813 TCCACAACTTTGTTATCAATTCTGAGAAGATAGGATCTTTCTAGAGTCTTGAAGGCAAAA 254872 Query 77189 TAGTTGTATGAAAAGTCTCTTTCGTAAAT-AATAACCGAATTTAGTTTGTCCTTATATTT 77247 || | ||| || ||| ||| |||| ||| |||||| | | | || |||| || Sbjct 254873 TAATCATATTCGAAATCT-TTTGAAAAATCAATTTTCGAATTAATTCTTTCTTTATTTTC 254931 Query 77248 GGTAACAATATC 77259 ||| || ||| Sbjct 254932 CATAATAAAATC 254943 >seq223 Length=111419 Score = 224 bits (248), Expect = 1e-53 Identities = 567/853 (66%), Gaps = 18/853 (2%) Strand=Plus/Plus Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 |||||||||| || || | || ||||| ||||| ||||| |||| | ||| ||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459 |||| ||||||| ||||| || |||||||| ||||| | |||| | ||| | Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATATATTTTGGGGACATCTAAAGCAAAAAGTA 58974 Query 46460 GTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTT 46519 ||||||| || || ||||| ||||| ||| | | ||||||| || || || | Sbjct 58975 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTGGAATTCATACCAATAAGAT 59034 Query 46520 TGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCG 46579 || || |||| || ||| || | | ||||| | ||||| || || || || Sbjct 59035 CAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGATGATTT 59094 Query 46580 ATGTTACTGTTTCCTCACTTGGTGGATGCA--TCAAATG-TTTAAACATTAAACATGCAA 46636 | |||| | | ||||| | | | | || | |||| | ||||| || |||| Sbjct 59095 GTTGTACTCTAGA---AGTTGGTAGTTTAAATTTAAGGGCTTTATAGATTAAGCAAGCAA 59151 Query 46637 AATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCA 46696 ||||| ||| || |||||||| | || || | |||||| ||||| ||||| ||||||| Sbjct 59152 AATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTGAGTCCAGGCA 59211 Query 46697 TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATATGCCT 46755 | |||||||| ||||| |||||||| ||||| | |||| | |||||||| || || ||| Sbjct 59212 TAAGTCCACGTTTTTTAAGCCAAAAAATAGCA-CAAAAGCTACCAGAAAATAAGATTCCT 59270 Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACCTT 46815 || || || |||| | | || |||||| | || |||| || ||||| | Sbjct 59271 TCAACTGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTATCACAATTCATCCATTTA 59330 Query 46816 TGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 46875 ||||| || |||||||| || || | || || || | ||| || | Sbjct 59331 GTTGCCCACTCTGCCTTTTTTTTAACTGCTGAAATATGAGAGATTGCTTCAAAAAGCATT 59390 Query 46876 tttttttCATCACTATCTTTAACATATGTATCTATTA--AAAGACTATACATTTCTGAAT 46933 | ||| | | | || ||| |||| |||| || | || || ||| | || || Sbjct 59391 TGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAATGAATATG--TCTCATTAT 59448 Query 46934 GAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCT 46993 | || | |||||||||||| ||||| | ||| | ||| ||||| | || |||| | Sbjct 59449 GTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCTTCTGGTATTTGTATTT 59508 Query 46994 CTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATG 47053 || || ||| | | | ||| || || | || || |||||||| ||||||||||| | Sbjct 59509 CTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAAAAAGG 59568 Query 47054 CCAATACATGTTTAATAAAATATTTTTC---ATCGGTAGTCAGTTTATTCCAGTCATTGA 47110 | | |||| ||| ||||| | | |||| ||| || || | | ||| || || Sbjct 59569 CTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTA---AGACTTTCCCAATCTCTGG 59625 Query 47111 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACA 47170 ||||| || ||| | |||||||| ||| ||||| || || ||||||||||||| Sbjct 59626 AATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATACA 59685 Query 47171 TATTCCATATATC 47183 | ||| ||||| Sbjct 59686 TTGACCAAATATC 59698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712926798336960