Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20sp._20chipmunk_20LX-
2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq849 127 5e-24
>seq849
Length=33325
Score = 127 bits (140), Expect = 5e-24
Identities = 163/223 (73%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
||||| || | ||| | || | ||| || || |||||||| |||||||| | || ||||
Sbjct 19403 CTGAGCCTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATCAGATAGAGTT 19462
Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001
|| ||||| ||||| ||||| || |||||||| | | || ||||| | | ||||
Sbjct 19463 CTTCCATCCTCTAGTTGCTTT--CCTGCGAAGATCAAACGTTGTTGGTCGGGTGGAATTC 19520
Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061
||||||| |||||||| ||| ||| ||| |||| | | |||||| ||||||||| |
Sbjct 19521 CTTCCTTGTCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCA 19580
Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || || || | ||| || || || | ||||||
Sbjct 19581 ATGTGATAGTCTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623
Score = 120 bits (132), Expect = 7e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
|| ||||| | || | ||| | ||| || ||||||||||| |||||||| | | ||||
Sbjct 19175 CTAAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAGAGAGAGTT 19234
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
|| || || |||| ||| || || ||||| | | || ||||| | | ||||||
Sbjct 19235 CTTCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTGGAATTCCT 19294
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063
||||| |||||||| ||| ||| ||| |||| | | |||||| ||||||||| |
Sbjct 19295 TCCTTGTCTTGAATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCTACTTCCAAT 19354
Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || ||||| | ||| || || || | ||||||
Sbjct 19355 GTTATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395
Score = 120 bits (132), Expect = 7e-22
Identities = 161/224 (72%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
|||||||| | || | ||| | ||| || || |||||||| |||||||| | | ||||
Sbjct 19631 CTGAGTCTCAATACCAAATGTAAAGTGGATTCCTTTTGGATATTGTAATCAGAGAGAGTT 19690
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
|| || || |||| |||||| || ||||| | | || || || | | ||||||
Sbjct 19691 CTTCCGTCCTCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCT 19750
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063
||||| |||||||| ||| ||| ||| |||| | | |||||| ||||||||| |
Sbjct 19751 TCCTTATCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCAAT 19810
Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| ||||| || || || | |||||| || || | |||||| ||
Sbjct 19811 GTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 19854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153808189820363
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |