Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq849 190 4e-43 seq445 140 7e-28 seq335 105 1e-17 seq223 98.7 2e-15 >seq849 Length=33325 Score = 190 bits (210), Expect = 4e-43 Identities = 168/210 (80%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 282890 TACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTC 282949 ||||| |||||| ||| |||||||||||| ||||| |||| || || | || ||||| Sbjct 19186 TACCAAATGTAAAGTGGATTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCGTCCTC 19245 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 || |||||| || ||||||||||||||||||||||| ||||| || ||||||||||| Sbjct 19246 TAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCTTG 19305 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 ||||||||||| || | ||||| || || |||| || ||||| | || || ||||| Sbjct 19306 AATCTTTGCTTTAACATTCTCGATTGTATCTGAAGGCTCTACTTCCAATGTTATAGTCTT 19365 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || |||||||| Sbjct 19366 TCCCGTCAAAGTTTTAACAAAAATCTGCAT 19395 Score = 187 bits (206), Expect = 5e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | | ||||| |||||| ||| ||| |||||||| ||||| |||| Sbjct 19624 ACCACCTCTGAGTCTCAATACCAAATGTAAAGTGGATTCCTTTTGGATATTGTAATCAGA 19683 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | || ||||||| ||||||||| |||||||||||||||||||| ||| || Sbjct 19684 GAGAGTTCTTCCGTCCTCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGGTGG 19743 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| ||||| ||||||||||| || | || || || || |||| || || Sbjct 19744 AATTCCTTCCTTATCTTGAATCTTTGCTTTAACATTCTCAATTGTATCTGAAGGCTCTAC 19803 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||| | ||||| ||||| || |||||||||||||| || |||||||| || Sbjct 19804 TTCCAATGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 19854 Score = 172 bits (190), Expect = 1e-37 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| ||| ||| |||||||| ||||| |||| || || | |||||||||||||| Sbjct 19421 TGTAAAGTGGATTCCTTTTGGATATTGTAATCAGATAGAGTTCTTCCATCCTCTAGTTGC 19480 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || || |||||||||||||||||||| ||||| || ||||||||||| |||||| Sbjct 19481 TTTCCTGCGAAGATCAAACGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCTTGAATCTTT 19540 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||| || | || || || || |||| || ||||| | ||||| ||||| || ||| Sbjct 19541 GCTTTAACATTCTCAATTGTATCTGAAGGCTCTACTTCCAATGTGATAGTCTTTCCTGTC 19600 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| || |||||||| Sbjct 19601 AAAGTTTTAACAAAAATCTGCAT 19623 >seq445 Length=134117 Score = 140 bits (154), Expect = 7e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | || |||| |||||| || || || || || |||||||||| Sbjct 79447 ACCACCTCTAAGTCTCAGCACCAAATGTAAGGTAGACTCCTTCTGAATATTGTAGTCAGA 79388 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || | |||||| || | ||| || || |||||||||| ||| ||||| ||| || Sbjct 79387 TAAAGTTCTGCCATCTTCCAATTGCTTTCCTGCAAAGATCAGACGCTGTTGATCAGGTGG 79328 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||| ||||| ||||||||||| || || | || || ||||| |||| || || Sbjct 79327 AATGCCCTCTTTGTCCTGGATCTTTGCCTTAACATTCTCAATGGTGTCGGAAGGCTCAAC 79268 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 ||| | ||||| ||||| || || ||||| || || || || ||||| ||| Sbjct 79267 TTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTTACAAAAATTTGCATCTTC 79216 >seq335 Length=109725 Score = 105 bits (116), Expect = 1e-17 Identities = 310/473 (66%), Gaps = 6/473 (1%) Strand=Plus/Minus Query 273507 ATCTTACCTTTGAAACCTTTGTACCACGGCTTCATGGCTACCATAGGTTCACCCTTCATC 273566 || || ||||| ||| ||| ||||| || |||| | ||||| ||||| || | | Sbjct 4639 ATTTTCCCTTTAAAAGATTTATACCAAGGAGTCATAGGAACCATCATCTCACCTTTTAAC 4580 Query 273567 AGTCGCTCCACATTACCAATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAA 273626 | | | || || ||| |||||||| || || || | ||||| || ||| Sbjct 4579 ATTTTTTTCAAGTTCATAATTATATCTTTTGGATTATAGTTAGGAACTGAGCTACTCCAG 4520 Query 273627 CCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACATAATAT 273686 || || ||||||||| || ||||||||||| ||| | || || ||||| || |||||| Sbjct 4519 CCTGTTCCAATACCGTCAGTACCATTCACCAAAATCATTGGAATTATTGGAACGTAATAT 4460 Query 273687 TCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCGTATCA 273746 |||||||||| | ||||| || || | ||| | || |||| |||||| | || Sbjct 4459 AAAGGCTCAATTTGTTGTCCATCATCATATAAGTAAGTTAATAAAGGATCATCAGCTTCT 4400 Query 273747 ACGAAAACCTTTCGCGTC--TGAGGATTCAGTTTCGTGAAAATGTACCTGGCACTCGCAT 273804 ||| | | || ||| | ||| || || || || || || | ||| ||| | Sbjct 4399 GGGAATATATATCTAGTCCATTTTGAT--AGCTTAGTAAATATATAACGAGCA-GCGCTT 4343 Query 273805 G-GTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTATG 273863 | || || || || | | || |||||| ||||| || || | || | Sbjct 4342 GCATCTTTTCCGCCCTCCTTTCTACTACCAAATTGACCACAAGGTTCTAATAAATTAAGA 4283 Query 273864 TTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCTCG 273923 ||||| || || || ||| |||||||| || || ||||| | || | ||| || Sbjct 4282 TTGTTACTTCCAACAAAATTTTGAGCCATGTTTACAATAGTACTTTGCAATGATGATTCT 4223 Query 273924 CCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTT 273976 |||||||| || ||||| ||||| || | ||||||| || || ||||| || Sbjct 4222 CCGTGGTGGTAAGCGCTATGTTCAGCAACATAACCAGCTAATTGTGCAACTTT 4170 >seq223 Length=111419 Score = 98.7 bits (108), Expect = 2e-15 Identities = 298/447 (67%), Gaps = 19/447 (4%) Strand=Plus/Minus Query 229975 TGTGC-GTTGAGGGTATTCTGTTCTCCGGGAGTTTCTGCGCCATCTTTTGGCT-ACGCAA 230032 ||||| ||||| || || | || || || || || || || || |||||||| | || Sbjct 59281 TGTGCAGTTGAAGGAATCTTATTTTCTGGTAGCTTTTGTGCTATTTTTTGGCTTAAAAAA 59222 Query 230033 CAAGGGCGTCATGCCCGGGCTCGGTCTGTCGAACGAATTCATCAGCAGGGACGAAGGTCT 230092 | || | | ||||| || ||| | || |||||| | |||||| | || ||||| || Sbjct 59221 CGTGGACTT-ATGCCTGGACTCACCTTTTCAAACGAACTTATCAGCCGTGATGAAGGACT 59163 Query 230093 TCACCAGCA-ATTTGGCGAGGTCTTGTATTCGAAGC---TAAATAACAAACTACCT--TT 230146 || || |||| || | | | | | |||| ||||| |||||||| || Sbjct 59162 ACAT--GCTGATTTTGCTTGCT-TAATCTATAAAGCCCTTAAATTT-AAACTACCAACTT 59107 Query 230147 CGAAACGGTGAAACAAATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGA 230206 | | | || |||||||| || |||||| |||| ||||| | ||| |||| || Sbjct 59106 CTAGA--GTACAACAAATCATCTCAGAAGCTGTTGATGTTGAAAGAAACTTCCTTTGTGA 59049 Query 230207 CGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATT 230266 || ||||| |||||| || |||||| | || |||| |||||||| ||||| Sbjct 59048 TTCTCTTCCTGTTGATCTTATTGGTATGAATTCCAGACTTATGGCTCAATATATTGAATT 58989 Query 230267 CGTAGCTGATCG--TATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAAC 230324 ||||||||| | || ||| | || ||| | ||| | ||||| || || Sbjct 58988 TGTAGCTGATAGACTACTTT--TTGCTTTAGATGTCCCCAAAATATATAATGTCACCAAT 58931 Query 230325 CCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGT 230384 || || | || ||||| || ||||||||||| || ||||| || |||||||||||| | Sbjct 58930 CCTTTTGATTGGATGGACCTTATTTCACTCCAAGGTAAAACAAATTTCTTCGAAAAGAGA 58871 Query 230385 GTCAGCGATTATCAAAGGCCCGGTGTA 230411 || | || || |||| | | || ||| Sbjct 58870 GTTGGAGAATACCAAATGGCTGGAGTA 58844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046727760121862