Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq223 233 2e-56 >seq223 Length=111419 Score = 233 bits (258), Expect = 2e-56 Identities = 578/866 (67%), Gaps = 41/866 (5%) Strand=Plus/Plus Query 23219 TTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTT 23278 |||| ||||| ||||| | ||||||| |||||||| ||||| | | ||| ||| | Sbjct 58855 TTTGGTATTCTCCAACTCTCTTTTCGAAGAAATTTGTTTTACCTTGGAGTGAAATAAGGT 58914 Query 23279 CCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTT----ACATGATAATTCCTTT 23334 |||| ||||||| ||||| | |||||||| ||| |||| ||| | Sbjct 58915 CCATCCAATCAAAAGGATTGGTGACATTATATAT---TTTGGGGACATC-TAAAGCAAAA 58970 Query 23335 AAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCAT-AGTTTATACCTAT 23393 | || ||||| ||||||||||||||||||||| ||| || || | || ||||| || Sbjct 58971 AGTAGTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTGGAATTCATACCAAT 59029 Query 23394 TAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAAT 23453 || | || |||| | |||| | | ||| | |||||| |||||| ||| || Sbjct 59030 AAGATCAACAGGAAGAGAATCACAAAGGAAGTTTCTTTCAACATCAACAGCTTCTGAGAT 59089 Query 23454 TATTTGAACAATAACTTCTTCACTAG--GTGGATATTTTAAATAC-------TTAAACAA 23504 ||||| || | | |||| || | || ||||||| ||| | | Sbjct 59090 GATTTG---------TTGTACTCTAGAAGTTGGTAGTTTAAATTTAAGGGCTTTATAGAT 59140 Query 23505 TAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGT 23564 ||| || ||||||||| |||||| |||||||| | || || | ||| || ||||| || Sbjct 59141 TAAGCAAGCAAAATCAGCATGTAGTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGT 59200 Query 23565 TAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAA 23623 | ||| ||||| | ||| |||||||||| |||||| || ||| |||| | | || |||| Sbjct 59201 GAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATAGCA-CAAAAGCTACCAGAAA 59259 Query 23624 AGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAAT 23683 | || || || ||||| || || | | || | | |||| | | || | ||| Sbjct 59260 ATAAGATTCCTTCAACTGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTATCACAAT 59319 Query 23684 CAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCA-ATT 23742 |||||||| ||| ||| | ||||| ||| || || || | | | ||| Sbjct 59320 TC---ATCCATTTAGTTGCCCACTCTGCCTTTTTTTTAACTG-CTGAAATATGAGAGATT 59375 Query 23743 GCTTTTAAGAGAAAAGTTTT---TTCTTCATTATCTGTTATATATGTATCAATTAGTAAA 23799 |||| || || | ||| ||||| | | || || |||||| ||||||| ||||| Sbjct 59376 GCTTCAAAAAGCA---TTTGACGTTCTTTAATTTCAGTAATATATCTATCAATGAGTAAT 59432 Query 23800 CTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCT 23859 ||| | ||| ||| || | ||||||||| || ||||| ||||| | ||||||| Sbjct 59433 GAATATGTCTCATTATGTATTTGTTCAATAGCCATTTGAAAAGCATAATACATTCTAGCT 59492 Query 23860 TCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCA 23919 || | | ||| | || ||| ||| || || || ||||| |||||||||||||| Sbjct 59493 TCTGGTATTTGTATTTCTCTAAGAAAATTTACCGCCAAGTTTTCCATAACAATACCATCA 59552 Query 23920 CTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTT 23979 || |||||||| || || ||||||||||| ||||| ||||||||| | | | || Sbjct 59553 CTTGCAGCAAAAAAGGCTAGAACATATTTGATAAAGTGTCTTTCAGGATCTTTAAGACTT 59612 Query 23980 TTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAG 24039 | |||||| | ||||| |||||||| ||| ||| |||||| ||| Sbjct 59613 TCCCAATCTCTGGAATCTTGACTTAAATCAATTTCTTCAGTAACCCAAAATGATGCTTCA 59672 Query 24040 GCACGCTTATACATTAGCCAAATATC 24065 || ||||||||| ||||||||| Sbjct 59673 GCTTTTTTATACATTGACCAAATATC 59698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521482439634200