Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20sp._20chipmunk_20LX- 2015_20[genbank_20GCA_5F000831705.1_202015-02-03] 853 sequences; 9,509,783 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq849 105 5e-18 >seq849 Length=33325 Score = 105 bits (116), Expect = 5e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| |||||||| |||| || | ||| ||||||||||| |||||||| Sbjct 19621 CATACCACCTCTGAGTCTCAATACCAAATGTAAAGTGGATTCCTTTTGGATATTGTAATC 19680 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| | |||| || | || ||||| |||||||||||||| || ||||| | Sbjct 19681 AGAGAGAGTTCTTCCGTCCTCTAATTGTTTCCCCGCAAAGATCAAACGTTGTTGATCAGG 19740 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| || ||||| ||||| || ||| | || || || | | | Sbjct 19741 TGGAATTCCTTCCTTATCTTGAATCTT-TGCTTTAACATTCTCAATTGTATCTGAAGGCT 19799 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| || || |||||||| || | ||||| || || || ||||| Sbjct 19800 CTACTTCCAATGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 19851 Score = 100 bits (110), Expect = 2e-16 Identities = 169/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 44097 ATTTTTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGA 44156 ||| || || |||||| ||||| |||||||| |||| || | ||| || ||||||| Sbjct 19155 ATTGTTTTTACATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGATTCTTTTTGGA 19214 Query 44157 TGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCT 44216 | |||||||| | ||| | |||| || | || || || |||||||||||||| | Sbjct 19215 TATTGTAATCAGAGAGAGTTCTTCCGTCCTCTAATTGTTTTCCTGCAAAGATCAAACGTT 19274 Query 44217 GCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTG 44275 | || || | || | |||||||| || ||||| ||||| || ||| | || || Sbjct 19275 GTTGGTCGGGTGGAATTCCTTCCTTGTCTTGAATCTT-TGCTTTAACATTCTCGATTGTA 19333 Query 44276 TCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGC 44335 || | | || || |||| || || ||||||||||| | || || || || || ||| Sbjct 19334 TCTGAAGGCTCTACTTCCAATGTTATAGTCTTTCCCGTCAAAGTTTTAACAAAAATCTGC 19393 Query 44336 AT 44337 || Sbjct 19394 AT 19395 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || ||||| || | ||| | ||| ||||||||||| |||||||| Sbjct 19393 CATACCACCTCTGAGCCTCAAGACTAAGTGTAAAGTGGATTCCTTTTGGATATTGTAATC 19452 Query 44167 GG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| | | || || || ||||| || || ||||||||||| || || || Sbjct 19453 AGATAGAGTT--CTTCCATCCTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGTTGGTCG 19510 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | || | |||||||| || ||||| ||||| || ||| | || || || | | Sbjct 19511 GGTGGAATTCCTTCCTTGTCTTGAATCTT-TGCTTTAACATTCTCAATTGTATCTGAAGG 19569 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || |||||||| || | || || || || || ||||| Sbjct 19570 CTCTACTTCCAATGTGATAGTCTTTCCTGTCAAAGTTTTAACAAAAATCTGCAT 19623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359986657562301