Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 260 2e-64 >seq1 Length=1292604 Score = 260 bits (288), Expect = 2e-64 Identities = 1180/1855 (64%), Gaps = 38/1855 (2%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 |||||||| || ||| | |||| || || | |||||| || || || ||||||| Sbjct 444100 GTGAATTGTATTGGACGTGTTGCGCTTTGAGTTCTTAGATAATAAATGCCAGTTTTTAAT 444041 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || |||| || || |||||||| || || || | | | | | || | | ||| Sbjct 444040 CCTTTTTTCCAGCCATAGAAATGCATCGATGATAACTTTGCAAAGTTAGCATTTTCCATA 443981 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || ||||| | ||| ||| || || | | ||||| ||||||||||| | || Sbjct 443980 TGAATATTTAAAGACTGAGACTGGCAAATATATGGGCCCCTATCTGCAGCCATATCGATT 443921 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAG 53046 | |||||||| ||| ||||||| |||||||||| | ||| | || | ||| Sbjct 443920 ACTGTCTTTTGCTTAATCTCCCAAACTGTTTTATAAAGTTCGCGGACGTCCTCCGGGATT 443861 Query 53047 GTTTG--TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 || | |||| |||||| |||| || | | || || | | || | | |||| | Sbjct 443860 GTAAGAATATTTTGAATACTTCCATTATTTGCAATGATATTTTGTTTAAGCCTGTCATCC 443801 Query 53105 CATAATTTTCTCTCGGTTAA--AACTC--TAAGGAGATGCGGATTAACTACTTGAAATTC 53160 |||| | | | | || || || | || | ||| ||||| ||||| |||||| Sbjct 443800 CATAG----CCCAAGTTCAAGCAAGTCATTGAGTAAATGAGGATTCACTACAAAAAATTC 443745 Query 53161 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATT 53220 ||||| | ||| || ||| || ||||| ||| | ||||| | | || || || Sbjct 443744 ACCAGAAAGTACCCTACGATGATATATATTTGAAGTAAATGGTTCAAAACTTTCGTTGTT 443685 Query 53221 TCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 53280 || || ||||| | || || ||||| ||||| || || | | | ||| | || Sbjct 443684 ACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGGAGCAATTAGAAGTGAATTACGGAG 443625 Query 53281 ACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC---GGTAC 53337 || || | || | ||||| || | ||||| | ||||| | || || Sbjct 443624 CCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCAGTCGCAAAGCCCAGAATCAGGCTT 443565 Query 53338 AACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 53397 ||| |||||||||||| ||||| ||| || || ||| || || Sbjct 443564 AACTCCCCACATGTCAAATTGTAGAATACCTTTACTCGCGGGTGACCCAGAATACGTTTC 443505 Query 53398 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 53457 || || || || || || || || || ||||| ||||| | || | |||||||| Sbjct 443504 ATACGGCCCATCTTTTTCTGCGAGCTCGCAACTAGCCTCGAGCGCCGCATAATAAATAAC 443445 Query 53458 TTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGG-ATAATTTAAG 53515 ||| || |||| |||||||| | | | |||| | | ||| |||| ||| ||| Sbjct 443444 TTCAAAAATCTCCTTATTTAATTTCCTAGCCTTCTCTGAT-TCATATGGCATACG--AAG 443388 Query 53516 -AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 53574 | ||||| ||||| | ||||||||||||||| || | || | |||| | ||| Sbjct 443387 CATCATAAAGCAATCTGCAAGTCCTTGAACACCAATTCCAAGCGGGCGATGTTTTAGATT 443328 Query 53575 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCT 53634 ||| ||| | |||||| | || |||||| ||| | |||||| || | || || Sbjct 443327 TGAGTTTTTACATTCTGGGAGAGAATAATATCCGTGATCAACAATTTTGTTTAAATTCCT 443268 Query 53635 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT----TGTCCATCTATTA 53690 ||| ||| | || ||||| | || ||| || ||| ||| |||| | Sbjct 443267 CGTAATAACTCTCGTAACTTCCTTTAACTTATCAAAGTCGAATGTTTTGTT-ATCTTTGT 443209 Query 53691 CAAACATGTTCA-ATG--CAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 53747 ||| | ||| | | |||| || ||||| |||||||| || | ||||| || | Sbjct 443208 CAACAAACTTCGGAAGACCAATGGACGCCAGGTTACAAACAGCAATTTCATTTGCGCTAG 443149 Query 53748 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 53807 || | ||| || || ||||| | |||||| | || || || ||||||| || | Sbjct 443148 TGTACTCTATAATTTCGGTGCATAAATTACTGGAAACAATAGTCCCCAAATTTTTCTGGT 443089 Query 53808 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGG 53867 ||||||| | || || ||||| || ||||| ||||| || |||||||| || | Sbjct 443088 TACTCTTACTATTCGCAGCGTCCTTGTAGCAGATGAAAGGCGTTCCTGTTTCAATTTGAG 443029 Query 53868 ATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCT----CTTT 53923 || || || ||| | | ||||| || || ||| || | | Sbjct 443028 CTTGTAGGATTAAAAACCAAAGTTTCTGCGCCTTCAT---AGTTTTTCTTCCGCGGCCCT 442972 Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 || ||||||| | ||| | | | |||||| || |||||||||| | ||| || Sbjct 442971 GCT-TTTCGTACTCTTCATATAGTTTCTTAAACTCATCACCCCAAACATCTTGCAACCCC 442913 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 54043 ||||||||||||||||| | | ||| ||| ||| | || || | | |||||| Sbjct 442912 CTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTCTTTCTCAACCCTCTCCATAAAT 442853 Query 54044 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 54103 |||||||||| |||||| || ||| || || | | ||| ||||| ||||| | Sbjct 442852 AGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCATCTCATCTCCTCTTTTCCATGA 442793 Query 54104 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTC 54163 |||||| | | || | ||| ||| || ||| ||||||||| ||||| || || | Sbjct 442792 TTCTTTCTTATTTCAATAAACTCCACAACATCTACATGCCACGGCTCCAAATAAATTGCA 442733 Query 54164 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 54223 || | || ||||| ||| || || || || |||||||| || | ||||||||| Sbjct 442732 ATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATATCTAGCAGTATCATTATAAACG 442673 Query 54224 CTCAACATTGGAATAATACCATTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCACT 54282 | ||||||||||| | ||||| || |||||||| ||| || ||||| || | Sbjct 442672 CGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGTACCCCGA-ATATACGAGCCCGT 442614 Query 54283 GGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA 54342 | | ||||||||| | || | || | || || || | ||| || ||| || Sbjct 442613 TCCTCTAATATTACTCACTGCCACTCCAAGACCGCCGGCAGTCTTACTAATATTTGCACA 442554 Query 54343 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 54402 | | ||| ||| ||| | || || |||||| ||| || || | |||| |||||| Sbjct 442553 TTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCCTCTGGTATTCTGAGTAAAAAACA 442494 Query 54403 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 |||||||| | | ||| || | || || | ||||| | ||| || ||||| Sbjct 442493 AGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAAAGCGTAGGTGTAGCATGGGTAAA 442434 Query 54463 CCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522 | |||| || | || || || || |||| || | || ||||| | ||| || Sbjct 442433 ATACTTTTGCGATAATAATTTATATGTTTCGAGTGCAGCCTCGATATCACCGCAATGTAT 442374 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 || | || | ||||| | || || ||||| || || |||||||| | ||| | Sbjct 442373 ACCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTCTCTACAATCTTGTTATCAATTCT 442314 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 54637 || | ||||| |||| |||||||| || ||||||| | ||| ||| ||| Sbjct 442313 GAGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAATAATCATATTCAAAATCT 442259 Score = 190 bits (210), Expect = 2e-43 Identities = 607/921 (66%), Gaps = 39/921 (4%) Strand=Plus/Plus Query 23789 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAGA---CATAACTCCCATTTT 23845 ||| || || ||||||| ||| | | ||| |||||| ||||||||| | Sbjct 164302 TTAGAATTCTGCATCTAAGTCAAACTTTTGGTCATCTTGATTAACCATAACTCCAGCCAT 164361 Query 23846 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 23905 ||| ||||| || || | ||||| || ||||| |||||||||| | ||| ||| || Sbjct 164362 TTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGATC 164421 Query 23906 CATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAA 23965 ||| ||||| | ||||| | |||||| || ||| | | ||| || ||| | Sbjct 164422 CATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATCCAGAGCAAAAAGGAG 164481 Query 23966 TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 24025 |||||| || ||||| || |||||| ||| | | | | |||||||| ||||| | Sbjct 164482 TCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTTCATTCCAATAAGATC 164541 Query 24026 AACTGGAAG--AGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 24083 ||| ||||| || |||| |||||| | | ||| | | || || |||| ||||| Sbjct 164542 AACAGGAAGTGAGTCACA--AAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAATT 164599 Query 24084 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATG---TTTAAACATCAAACATGCG 24140 | |||| | | | ||| | | || | | ||| | || || || || Sbjct 164600 TGTTGTACTCTAGA---AGTTGGTAGTTTATATTTAAGAGCTTTGTATATTAAGCAAGCA 164656 Query 24141 AAATC-GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 24199 || || ||| |||| || || || | ||||| | ||| || || || || ||||| || Sbjct 164657 AAGTCAGCA-TGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCAGG 164715 Query 24200 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTC 24258 ||| || ||||||||||||||||||||||| | | |||| | | |||||||| | ||||| Sbjct 164716 CATAAGTCCACGCTTTTTAAGCCAAAATATAG-CACAAAAGCTACCAGAAAAAAGAATTC 164774 Query 24259 CTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTC---ATGTATCC 24315 ||||||| || || |||||| ||| || || || | || || || |||| Sbjct 164775 CTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCTTTCATTATTCATCC 164831 Query 24316 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 24375 | || ||||| || || |||||||| || || || ||||| | ||| | Sbjct 164832 ATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAATAGCCTCAAAAA 164891 Query 24376 G-AT---AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431 | || | || ||| ||| || ||| |||| | ||||| || | ||| || Sbjct 164892 GCATTTGACGTTCTTTTATT----TCAGTAATATATCTGTCAATTAACAAGGAATATGTT 164947 Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA-TCTAGCCTCGGTAAT 24490 || |||||| | ||||| |||||||||||| | || | ||| ||| || || | || Sbjct 164948 TCATTATGAATTTGCTCAATAGCCATTTGAAATGCATA-ATACATTCTTGCTTCTGGGAT 165006 Query 24491 CTGTACTTCT-ATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 |||| |||| || |||| | | || || ||||| | || || || ||||| || | Sbjct 165007 ATGTATTTCTCTTAGGAAATTG-ACAGCCAAGTTTTCCATAACAATACCATCACTAGCAG 165065 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT--AGTTTATTCCA 24607 |||| || || | || | ||| ||||||| | | || ||| || || | | ||| Sbjct 165066 CAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTC--AGGGTCTTTAAGACTTTCCCA 165123 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 ||| | |||||| | || || | ||||| |||||| ||||| ||||| || Sbjct 165124 ATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGCTTT 165183 Query 24668 TTTATACATATTCCAGATGTC 24688 |||||||||| ||| || || Sbjct 165184 TTTATACATAAACCAAATATC 165204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721399618960