Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835705.1_202016- 10-24] 27 sequences; 8,965,564 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq18 145 1e-29 seq25 140 5e-28 >seq18 Length=776017 Score = 145 bits (160), Expect = 1e-29 Identities = 176/239 (74%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 124533 AATACAAT---GCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATT 124589 |||||||| ||| || ||| | ||||| | ||||| || || || ||| | || || Sbjct 281079 AATACAATTATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACAATCACTTTGGAAGTT 281138 Query 124590 GAAGCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCA 124649 ||| || || |||||| ||| |||| || ||||||||||| ||||| || ||| Sbjct 281139 GAACCATCGGACACAATTGAAAATGTAAAGGCAAAGATTCAAGATAAGGAAGGAATTCCA 281198 Query 124650 CCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAA 124709 ||||||||||| | | || |||||||| || |||||||||||| | |||| | Sbjct 281199 CCTGATCAACAGCGTTTAATCTTTGCAGGGAAGCAATTAGAGGATGGAAGAACTCTCTCT 281258 Query 124710 GATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||||||||| || || ||||||||||| || ||| | | |||||||||| Sbjct 281259 GATTACAATATTCAAAAGGAGTCCACTTTGCATTTAGTCTTAAGACTCAGAGGTGGTAT 281317 Score = 140 bits (154), Expect = 5e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || ||| | || || || || || ||| ||||| ||||| || Sbjct 281316 ATGCAGATTTTTGTCAAAACATTGACGGGAAAGACAATCACTTTAGAGGTTGAACCATCG 281375 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| |||| || ||||||||||| || || || |||||||||||| Sbjct 281376 GACACAATTGAAAATGTAAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCAA 281435 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || ||||| || |||||||| ||| | |||| | ||||| ||| Sbjct 281436 CAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAAT 281495 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||||| ||||| || ||| | | |||||||||| Sbjct 281496 ATTCAAAAAGAGTCCACTTTACATTTAGTCTTAAGACTCAGAGGTGGTAT 281545 Score = 127 bits (140), Expect = 3e-24 Identities = 172/236 (73%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || ||| | ||||| || || || ||| |||| ||||| || Sbjct 281544 ATGCAGATTTTTGTCAAAACATTGACAGGAAAGACAATCACTTTAGAAGTTGAACCATCG 281603 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| || |||| || || ||||||||||| || || || ||||||||||| Sbjct 281604 GACACAATTGAGAACGTTAAGGCA-AAGATTCAAGATAAGGAGGGAATTCCACCTGATCA 281662 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || ||||| || |||||||| ||| | |||| | ||||| || Sbjct 281663 ACAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAA 281722 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAA 124772 ||| |||||||| || ||||| |||||||| || | | ||||||| || |||| Sbjct 281723 TATCCAAAAAGAGTCCACTTTACATTTGGTATTGAGACTTAGAGGTGGAATGTAAA 281778 >seq25 Length=676938 Score = 140 bits (154), Expect = 5e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| || |||| || || || || || | || ||||| | Sbjct 542233 ATGCAGATTTTTGTAAAAACTTTAACTGGGAAGACCATCACATTGGAAGTTGAACCTTCA 542174 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| ||||| || |||||||| ||||||||||| |||||||||||| Sbjct 542173 GACACTATTGAGAATGTAAAAGCAAAGATTCAAGACAAAGAAGGTATCCCACCTGATCAA 542114 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||||||||| || || || | || || ||||| ||| Sbjct 542113 CAGCGTCTGATCTTTGCTGGAAAACAATTGGAAGACGGTAGGACTCTATCTGATTACAAT 542054 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 |||||||| || || |||||||| ||||| || | || |||||||| ||| Sbjct 542053 ATTCAAAAGGAGTCTACTTTGCACTTGGTATTGAGACTAAGAGGTGGTGTTA 542002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455745033600